RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 VPS18Q9P253 973 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 HPCAL4Q9UM19 191 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 RPTORQ8N122 1335 aa19.71■□□□□ 0.75
VIM-209ENST00000544301 GUCY2CP25092 1073 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 ODR4Q5SWX8 454 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 STXBP4Q6ZWJ1 553 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 FAM71BQ8TC56 605 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 EXOC4Q96A65 974 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 DMAC2Q9NW81 257 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 RNF14Q9UBS8 474 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 DMGDHQ9UI17 866 aaKnown RBP19.7■□□□□ 0.74
VIM-209ENST00000544301 GRID2IPA4D2P6 1211 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 ARHGEF35A5YM69 484 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 PPP1R12BO60237 982 aaPredicted RBP19.7■□□□□ 0.74
VIM-209ENST00000544301 BCRP11274 1271 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 AARSP49588 968 aaKnown RBP eCLIP19.7■□□□□ 0.74
VIM-209ENST00000544301 CXCL9Q07325 125 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 CFAP221Q4G0U5 840 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 HSP90B2PQ58FF3 399 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 GJB7Q6PEY0 223 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 CLEC4DQ8WXI8 215 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 MED4Q9NPJ6 270 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 AGPAT3Q9NRZ7 376 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 NAGPAQ9UK23 515 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 FAN1Q9Y2M0 1017 aa19.7■□□□□ 0.74
VIM-209ENST00000544301 PHF20L1A8MW92 1017 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 DDX39AO00148 427 aaKnown RBP19.69■□□□□ 0.74
VIM-209ENST00000544301 NFIBO00712 420 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 ANXA13P27216 316 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 HS2ST1Q7LGA3 356 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 NEK9Q8TD19 979 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 AENQ8WTP8 325 aaKnown RBP19.69■□□□□ 0.74
VIM-209ENST00000544301 HOOK2Q96ED9 719 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 GDAP1L1Q96MZ0 367 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 HINFPQ9BQA5 517 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 SELENOOQ9BVL4 669 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 RBM12Q9NTZ6 932 aaKnown RBP19.69■□□□□ 0.74
VIM-209ENST00000544301 ZC3H4Q9UPT8 1303 aaKnown RBP19.69■□□□□ 0.74
VIM-209ENST00000544301 HIP1RO75146 1068 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 MAPK7Q13164 816 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 DAW1Q8N136 415 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 PRPF38AQ8NAV1 312 aaKnown RBP19.69■□□□□ 0.74
VIM-209ENST00000544301 IL31RAQ8NI17 732 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 STRA6Q9BX79 667 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 KCNH7Q9NS40 1196 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 PSD3Q9NYI0 1048 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 NENFQ9UMX5 172 aa19.69■□□□□ 0.74
VIM-209ENST00000544301 SCAF8Q9UPN6 1271 aaKnown RBP19.69■□□□□ 0.74
VIM-209ENST00000544301 CYP2J2P51589 502 aa19.68■□□□□ 0.74
VIM-209ENST00000544301 MRPS25P82663 173 aaKnown RBP19.68■□□□□ 0.74
VIM-209ENST00000544301 SLC7A5Q01650 507 aa19.68■□□□□ 0.74
VIM-209ENST00000544301 ALKBH5Q6P6C2 394 aaKnown RBP19.68■□□□□ 0.74
VIM-209ENST00000544301 MIER3Q7Z3K6 550 aa19.68■□□□□ 0.74
VIM-209ENST00000544301 PKD2L1Q9P0L9 805 aa19.68■□□□□ 0.74
VIM-209ENST00000544301 DHX15O43143 795 aaKnown RBP19.67■□□□□ 0.74
VIM-209ENST00000544301 FMO5P49326 533 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 NIPA1Q7RTP0 329 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 MYOZ2Q9NPC6 264 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 PACSIN2Q9UNF0 486 aaPredicted RBP19.67■□□□□ 0.74
VIM-209ENST00000544301 FRMD4BQ9Y2L6 1034 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 WDR46O15213 610 aaKnown RBP19.67■□□□□ 0.74
VIM-209ENST00000544301 PPP1R37O75864 691 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 FLOT1O75955 427 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 SYF2O95926 243 aaKnown RBP19.67■□□□□ 0.74
VIM-209ENST00000544301 DNA2P51530 1060 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 GHRHRQ02643 423 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 RASA3Q14644 834 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 MCF2L2Q86YR7 1114 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 GOLGA5Q8TBA6 731 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 STIM2Q9P246 746 aa19.67■□□□□ 0.74
VIM-209ENST00000544301 LOXHD1Q8IVV2 1947 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 A0A0U1RQG5 324 aaPredicted RBP19.66■□□□□ 0.74
VIM-209ENST00000544301 P4HBP07237 508 aaKnown RBP19.66■□□□□ 0.74
VIM-209ENST00000544301 FERP16591 822 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 TKFCQ3LXA3 575 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 GLE1Q53GS7 698 aaKnown RBP19.66■□□□□ 0.74
VIM-209ENST00000544301 PADI6Q6TGC4 694 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 DNAAF5Q86Y56 855 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 UBIAD1Q9Y5Z9 338 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 MYH11P35749 1972 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 PHACTR2O75167 634 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 GFPT2O94808 682 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 STAT1P42224 750 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 ITGB3BPQ13352 177 aaPredicted RBP19.66■□□□□ 0.74
VIM-209ENST00000544301 TNIP1Q15025 636 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 CBWD6Q4V339 395 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 CBWD3Q5JTY5 395 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 CBWD5Q5RIA9 395 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 C8orf74Q6P047 294 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 VPS36Q86VN1 386 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 SLC9A9Q8IVB4 645 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 LPAR1Q92633 364 aa19.66■□□□□ 0.74
VIM-209ENST00000544301 INPP4AQ96PE3 977 aaPredicted RBP19.66■□□□□ 0.74
VIM-209ENST00000544301 AGO4Q9HCK5 861 aaKnown RBP19.66■□□□□ 0.74
VIM-209ENST00000544301 ATP8B3O60423 1300 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 CCDC66A2RUB6 948 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 DDX3XO00571 662 aaKnown RBP eCLIP19.65■□□□□ 0.748e-32■■■□□ 14.7
VIM-209ENST00000544301 ALAS1P13196 640 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 MRPS9P82933 396 aaKnown RBP19.65■□□□□ 0.74
VIM-209ENST00000544301 PPP2R5AQ15172 486 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms