RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 AMPD3Q01432 767 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 SPIRE1Q08AE8 756 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 GRB10Q13322 594 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 ITGB3BPQ13352 177 aaPredicted RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 CTTNQ14247 550 aaKnown RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 NEDD9Q14511 834 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 TTLL4Q14679 1199 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 EPHA7Q15375 998 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 PPP1R26Q5T8A7 1209 aaPredicted RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 Q6ZVU0 165 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 SV2BQ7L1I2 683 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 CYFIP1Q7L576 1253 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 CATSPER3Q86XQ3 398 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 FBXO16Q8IX29 292 aaPredicted RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 MSL3Q8N5Y2 521 aaKnown RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 RAET1EQ8TD07 263 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 SCFD2Q8WU76 684 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 USP6NLQ92738 828 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 STAMQ92783 540 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 PAGE5Q96GU1 130 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 DYDC2Q96IM9 177 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 CCDC43Q96MW1 224 aaKnown RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 KCTD15Q96SI1 283 aaPredicted RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 TINF2Q9BSI4 451 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 LRRC27Q9C0I9 530 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 MLXIPQ9HAP2 919 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 JPH1Q9HDC5 661 aaPredicted RBP7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 VTA1Q9NP79 307 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 RGL1Q9NZL6 768 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 SLC9A2Q9UBY0 812 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 DNM3Q9UQ16 869 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 TCHHQ07283 1943 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 MYH15Q9Y2K3 1946 aa7.42□□□□□ -1.22
CLTCL1-206ENST00000540896 PLXNB2O15031 1838 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ZNFX1Q9P2E3 1918 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 DOCK3Q8IZD9 2030 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 A0A087WWV3 80 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 WDR64B1ANS9 1081 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 NOP56O00567 594 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 BACH1O14867 736 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ADCY3O60266 1144 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 DKC1O60832 514 aaKnown RBP eCLIP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 MED24O75448 989 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SLITRK3O94933 977 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 GGPS1O95749 300 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 KRT18P05783 430 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 PSAPP07602 524 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 HOXC6P09630 235 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 CCDC192P0DO97 292 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ELNP15502 786 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 KCNA2P16389 499 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 RPA1P27694 616 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SFNP31947 248 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SP2Q02086 613 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SEMA3FQ13275 785 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 PNOCQ13519 176 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 IRF5Q13568 498 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 POSTNQ15063 836 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 PKN2Q16513 984 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 LY6KQ17RY6 165 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ZNF746Q6NUN9 644 aaPredicted RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 MIS18BP1Q6P0N0 1132 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 MAMDC4Q6UXC1 1216 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 TRMT1LQ7Z2T5 733 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 DHX37Q8IY37 1157 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SMAP1Q8IYB5 467 aaPredicted RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 GRAMD1CQ8IYS0 662 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 BANK1Q8NDB2 785 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 NPLOC4Q8TAT6 608 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 NEK9Q8TD19 979 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 MORC4Q8TE76 937 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 RAD54LQ92698 747 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ERCC4Q92889 916 aaPredicted RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SMARCE1Q969G3 411 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 CCDC47Q96A33 483 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 FGD4Q96M96 766 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 PNMA5Q96PV4 448 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 NACC1Q96RE7 527 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 APBA2Q99767 749 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 HSD17B14Q9BPX1 270 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 SENP7Q9BQF6 1050 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 MMTAG2Q9BU76 263 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 POLR3CQ9BUI4 534 aaPredicted RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ABHD16BQ9H3Z7 469 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 MAGEF1Q9HAY2 307 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 TUFT1Q9NNX1 390 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 DDX41Q9UJV9 622 aaKnown RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 DNMT3LQ9UJW3 386 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 ZHX1Q9UKY1 873 aaPredicted RBP7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 PCDHA10Q9Y5I2 948 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 PTCH2Q9Y6C5 1203 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 NFASCO94856 1347 aa7.41□□□□□ -1.22
CLTCL1-206ENST00000540896 E9PMD0 336 aa7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 BIN1O00499 593 aa7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 SPINT1O43278 529 aa7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 SNAI1O95863 264 aaPredicted RBP7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 CCNE2O96020 404 aa7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 GH1P01241 217 aa7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 P4HBP07237 508 aaKnown RBP7.4□□□□□ -1.22
CLTCL1-206ENST00000540896 SPATA31C1P0DKV0 1188 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms