RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 R3HDM1Q15032 1099 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 SHROOM1Q2M3G4 852 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 RESP18Q5W5W9 173 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 FAM196AQ6ZSG2 479 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 MARK2Q7KZI7 788 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 RSPH3Q86UC2 560 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 GAB3Q8WWW8 586 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 SCG3Q8WXD2 468 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 NMD3Q96D46 503 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 CTAGE1Q96RT6 745 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 CCDC68Q9H2F9 335 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 FAM114A2Q9NRY5 505 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 LARSQ9P2J5 1176 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 DKK3Q9UBP4 350 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 PNMA2Q9UL42 364 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 USP15Q9Y4E8 981 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 CAPN6Q9Y6Q1 641 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 MYH10P35580 1976 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 NPHP3-ACAD11A0A0J9YXS1 232 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 ENTPD5O75356 428 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 PDE5AO76074 875 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 KCNA2P16389 499 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 PRLRP16471 622 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 RXRGP48443 463 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 TUFMP49411 452 aaKnown RBP10.21□□□□□ -0.77
CLIP1-214ENST00000540539 CCR3P51677 355 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 ARFIP2P53365 341 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 RASSF7Q02833 373 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 KIF22Q14807 665 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 PARP6Q2NL67 630 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 PDCD4Q53EL6 469 aaKnown RBP10.21□□□□□ -0.77
CLIP1-214ENST00000540539 LRRC8BQ6P9F7 803 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 KLHL35Q6PF15 583 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 CAPN12Q6ZSI9 719 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 OTUD6AQ7L8S5 288 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 SCAIQ8N9R8 606 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 FNDC8Q8TC99 324 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 NRG4Q8WWG1 115 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 TLCD1Q96CP7 247 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 HSPBAP1Q96EW2 488 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 MAELQ96JY0 434 aaKnown RBP10.21□□□□□ -0.77
CLIP1-214ENST00000540539 OLFM3Q96PB7 478 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 MAK16Q9BXY0 300 aaKnown RBP10.21□□□□□ -0.77
CLIP1-214ENST00000540539 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.21□□□□□ -0.77
CLIP1-214ENST00000540539 STOML1Q9UBI4 398 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 NHSQ6T4R5 1651 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 HEG1Q9ULI3 1381 aa10.21□□□□□ -0.77
CLIP1-214ENST00000540539 A0A0D9SFI3 127 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SMIM23A6NLE4 172 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SPDYE16A6NNV3 312 aaPredicted RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 KDM1AO60341 852 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 MGEA5O60502 916 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 PTCD1O75127 700 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 STK10O94804 968 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 UNC5CO95185 931 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 TCP1P17987 556 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 ERCC5P28715 1186 aaPredicted RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SKIV2L2P42285 1042 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 PAFAH1B1P43034 410 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 KRT83P78385 493 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 KIF23Q02241 960 aaPredicted RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SLC39A14Q15043 492 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SAFBQ15424 915 aaKnown RBP eCLIP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 GSTA3Q16772 222 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 KRT71Q3SY84 523 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SNX30Q5VWJ9 437 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SPATA1Q5VX52 437 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 CACTIN-AS1Q8N1I8 211 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 LRRC8CQ8TDW0 803 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 NDEL1Q9GZM8 345 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 NSRP1Q9H0G5 558 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 GBA3Q9H227 469 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 STK32BQ9NY57 414 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 HYOU1Q9Y4L1 999 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 BTBD19C9JJ37 291 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 FGFR1OPO95684 399 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 AFPP02771 609 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 S100A1P23297 94 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 ECHS1P30084 290 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 STX17P56962 302 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 IGBP1P78318 339 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 CYLC2Q14093 348 aaPredicted RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 TRIM14Q14142 442 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 CERKLQ49MI3 558 aaPredicted RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 NT5DC1Q5TFE4 455 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 CABP7Q86V35 215 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SSH3Q8TE77 659 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 DYDC2Q96IM9 177 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 DHX36Q9H2U1 1008 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 ADAM7Q9H2U9 754 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 RXFP1Q9HBX9 757 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SNRKQ9NRH2 765 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 TLR7Q9NYK1 1049 aaKnown RBP10.21□□□□□ -0.78
CLIP1-214ENST00000540539 PTTG2Q9NZH5 202 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 SSX2IPQ9Y2D8 614 aa10.21□□□□□ -0.78
CLIP1-214ENST00000540539 KCPQ6ZWJ8 1503 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 BTAF1O14981 1849 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 FBP2O00757 339 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 LCA5LO95447 670 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms