RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SQORQ9Y6N5 450 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 BAHCC1Q9P281 2608 aa14.22□□□□□ -0.13
CLSTN3-208ENST00000538933 STAG3L1P0CL83 205 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 SCG2P13521 617 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 MRPS6P82932 125 aaKnown RBP14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 TROAPQ12815 778 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 TRIM22Q8IYM9 498 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 CNTNAP3BQ96NU0 1288 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 IPO9Q96P70 1041 aaKnown RBP14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 CNTNAP3Q9BZ76 1288 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 POMKQ9H5K3 350 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 PADI3Q9ULW8 664 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 SMC3Q9UQE7 1217 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 PCDHB12Q9Y5F1 795 aa14.21□□□□□ -0.13
CLSTN3-208ENST00000538933 FRMPD4Q14CM0 1322 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 HIDE1A8MVS5 230 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 KLRF2D3W0D1 207 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 ASGR2P07307 311 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 ADD1P35611 737 aaKnown RBP14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 SLC35G1Q2M3R5 365 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 RSPH3Q86UC2 560 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 CCDC105Q8IYK2 499 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 STAG2Q8N3U4 1231 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 CCDC82Q8N4S0 544 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 FAM184AQ8NB25 1140 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 ZBTB10Q96DT7 871 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 LZTS2Q9BRK4 669 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 TMEM260Q9NX78 707 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 DLL3Q9NYJ7 618 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 HCSTQ9UBK5 93 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 TUBE1Q9UJT0 475 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 KIF3AQ9Y496 699 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 PCDHA1Q9Y5I3 950 aa14.2□□□□□ -0.14
CLSTN3-208ENST00000538933 DENND4AQ7Z401 1863 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 AOC1P19801 751 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 CDC27P30260 824 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 SSRP1Q08945 709 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 PPFIA1Q13136 1202 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 ANGPT1Q15389 498 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 GRIK4Q16099 956 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 GNPTABQ3T906 1256 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 LLGL2Q6P1M3 1020 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 FCHSD1Q86WN1 690 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 ZDHHC14Q8IZN3 488 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 SENP7Q9BQF6 1050 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 LLPHQ9BRT6 129 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 ADAM7Q9H2U9 754 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 MAD2L2Q9UI95 211 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 LZTS1Q9Y250 596 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 NID2Q14112 1375 aa14.19□□□□□ -0.14
CLSTN3-208ENST00000538933 IGSF9BQ9UPX0 1349 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 GSTTP1A0A1W2PQM5 241 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 GCOM1H8Y6P7 765 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 ZBTB5O15062 677 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 FIBPO43427 364 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 STAM2O75886 525 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 PLEKHA8P1O95397 391 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 POLR2MP0CAP2 368 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 SRGAP2BP0DMP2 458 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 SARSP49591 514 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 HMGN5P82970 282 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 PLCB3Q01970 1234 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 CUL4AQ13619 759 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 PUM1Q14671 1186 aaKnown RBP eCLIP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 FAM102BQ5T8I3 360 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 TMTC3Q6ZXV5 915 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 KIAA2013Q8IYS2 634 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 DTWD2Q8NBA8 298 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 COLGALT1Q8NBJ5 622 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 PIBF1Q8WXW3 757 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 INTS4Q96HW7 963 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 NECTIN4Q96NY8 510 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 SLC26A6Q9BXS9 759 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 SEMA4AQ9H3S1 761 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 CWH43Q9H720 699 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 TYW1Q9NV66 732 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 RTEL1Q9NZ71 1219 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 LIMD1Q9UGP4 676 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 SEC63Q9UGP8 760 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 GPR179Q6PRD1 2367 aa14.18□□□□□ -0.14
CLSTN3-208ENST00000538933 PALM3A6NDB9 673 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 MGEA5O60502 916 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 LMNAP02545 664 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 TCF7P36402 384 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 ITIH3Q06033 890 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 IER5Q5VY09 327 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 PLPP4Q5VZY2 271 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 CMTR1Q8N1G2 835 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 MRPS27Q92552 414 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 WASF1Q92558 559 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 MFSD1Q9H3U5 465 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 AAASQ9NRG9 546 aa14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 ORC3Q9UBD5 711 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-208ENST00000538933 ATP9AO75110 1047 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 IFNAR1P17181 557 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 SP4Q02446 784 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 HOMER1Q86YM7 354 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 THNSL1Q8IYQ7 743 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 NSUN7Q8NE18 718 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 FLCNQ8NFG4 579 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms