RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 SUCLA2Q9P2R7 463 aaPredicted RBP17.49■□□□□ 0.39
CHMP1A-202ENST00000535997 HERC5Q9UII4 1024 aaKnown RBP17.49■□□□□ 0.39
CHMP1A-202ENST00000535997 CEP104O60308 925 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 CC2D2BQ6DHV5 1058 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 STXBP4Q6ZWJ1 553 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 ZNF720Q7Z2F6 126 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 FMNL3Q8IVF7 1028 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 SPICE1Q8N0Z3 855 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 CCDC43Q96MW1 224 aaKnown RBP17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 NACC1Q96RE7 527 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 CSRNP1Q96S65 589 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.48■□□□□ 0.391e-7■■□□□ 12.2
CHMP1A-202ENST00000535997 WDR18Q9BV38 432 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 STK33Q9BYT3 514 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 TAF1DQ9H5J8 278 aaPredicted RBP17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 SCN9AQ15858 1988 aa17.48■□□□□ 0.39
CHMP1A-202ENST00000535997 GCOM1H8Y6P7 765 aaPredicted RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 DDX3XO00571 662 aaKnown RBP eCLIP17.47■□□□□ 0.392e-9■■■■□ 26.7
CHMP1A-202ENST00000535997 CFBP00751 764 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 POLR2MP0CAP2 368 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 ZBTB48P10074 688 aaPredicted RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 NMT1P30419 496 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 ZNF131P52739 623 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 CUL1Q13616 776 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 RRP1BQ14684 758 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 EMC10Q5UCC4 262 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 HS2ST1Q7LGA3 356 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 PEX26Q7Z412 305 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 KLHL7Q8IXQ5 586 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 C10orf67Q8IYJ2 551 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 AKT1S1Q96B36 256 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 DYDC2Q96IM9 177 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 ARHGEF10LQ9HCE6 1279 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 AJAP1Q9UKB5 411 aaPredicted RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 SMCHD1A6NHR9 2005 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 UBE4BO95155 1302 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 ZNF233A6NK53 670 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 CCDC188H7C350 402 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 PGRMC1O00264 195 aaKnown RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 TRIM66O15016 1216 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 EIF3HO15372 352 aaKnown RBP eCLIP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 KRT14P02533 472 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 TAL1P17542 331 aaPredicted RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 POLD1P28340 1107 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 METTL13Q8N6R0 699 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 SLC30A5Q8TAD4 765 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 PRMT6Q96LA8 375 aaPredicted RBP17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 ZMYM2Q9UBW7 1377 aa17.47■□□□□ 0.39
CHMP1A-202ENST00000535997 COL2A1P02458 1487 aaPredicted RBP17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 CCDC172P0C7W6 258 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 LMNB1P20700 586 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 SOX5P35711 763 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 FMO5P49326 533 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 PRELPP51888 382 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 PPP2R5AQ15172 486 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 CEP55Q53EZ4 464 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 ZC2HC1CQ53FD0 456 aaPredicted RBP17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 STYK1Q6J9G0 422 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 RASGEF1CQ8N431 466 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 PIK3R5Q8WYR1 880 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 DMAC2Q9NW81 257 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 ODF2LQ9ULJ1 636 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 STXBP5LQ9Y2K9 1186 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 FRMD4BQ9Y2L6 1034 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 TMX2Q9Y320 296 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 DAAM1Q9Y4D1 1078 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 H0YIN7 160 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 EVI5O60447 810 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 GAS7O60861 476 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 HSPA9P38646 679 aaKnown RBP17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 GUCY2FP51841 1108 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 GJB7Q6PEY0 223 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 FAM178BQ8IXR5 827 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 FIZ1Q96SL8 496 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 WDR11Q9BZH6 1224 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 GOLPH3Q9H4A6 298 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 PLEKHA4Q9H4M7 779 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 EHMT1Q9H9B1 1298 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.46■□□□□ 0.398e-18■■■■■ 88.3
CHMP1A-202ENST00000535997 GOPCQ9HD26 462 aa17.46■□□□□ 0.39
CHMP1A-202ENST00000535997 COL11A2P13942 1736 aaPredicted RBP17.46■□□□□ 0.38
CHMP1A-202ENST00000535997 TMCO5BA8MYB1 307 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 F8VZ95 297 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 ZBTB39O15060 712 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 SART1O43290 800 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 CORO7P57737 925 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 GNGT1P63211 74 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 TRADDQ15628 312 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 DAAM2Q86T65 1068 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 U2AF1L4Q8WU68 220 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 CHURC1Q8WUH1 139 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 FAM107BQ9H098 131 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 BHMG1C9JSJ3 638 aaPredicted RBP17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 CHMP2AO43633 222 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 VIL1P09327 827 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 ECE1P42892 770 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 GALCP54803 685 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 NT5DC3Q86UY8 548 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 DNAAF5Q86Y56 855 aa17.45■□□□□ 0.38
CHMP1A-202ENST00000535997 BCAS4Q8TDM0 211 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms