RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	FAM151A	Q8WW52	585 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TEKT1	Q969V4	418 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	RNPC3	Q96LT9	517 aa	Known RBP	3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106		Q96M66	194 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ZDHHC15	Q96MV8	337 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PLA2G12B	Q9BX93	195 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	C1QTNF1	Q9BXJ1	281 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	KRTAP4-5	Q9BYR2	181 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	MIR1-1HG	Q9H1L0	117 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	DUSP15	Q9H1R2	295 aa	Predicted RBP	3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PORCN	Q9H237	461 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	USP40	Q9NVE5	1235 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CFAP54	Q96N23	3096 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ADAMTS20	P59510	1910 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ALPK3	Q96L96	1907 aa		3.76	□□□□□ -1.81
CHMP4A-208	ENST00000534106	USP34	Q70CQ2	3546 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CACNA1G	O43497	2377 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	COL2A1	P02458	1487 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SEMA7A	O75326	666 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	FRAT2	O75474	233 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	HOXB7	P09629	217 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ZGLP1	P0C6A0	271 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SRF	P11831	508 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CAPN2	P17655	700 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	EIF4B	P23588	611 aa	Known RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CNGA1	P29973	690 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CYP2C19	P33261	490 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ADCYAP1R1	P41586	468 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	HMGCS2	P54868	508 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TLE2	Q04725	743 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	IFIT5	Q13325	482 aa	Known RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	FAM110C	Q1W6H9	321 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CLEC16A	Q2KHT3	1053 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SHROOM1	Q2M3G4	852 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	LRRC24	Q50LG9	513 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TMEM31	Q5JXX7	168 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PRAMEF19	Q5SWL8	479 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	KRT40	Q6A162	431 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SLC39A5	Q6ZMH5	540 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SIRT2	Q8IXJ6	389 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SCYL3	Q8IZE3	742 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	FAM13C	Q8NE31	585 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	BAHD1	Q8TBE0	780 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	USP6NL	Q92738	828 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TIFA	Q96CG3	184 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	INTS4	Q96HW7	963 aa	Known RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	C20orf173	Q96LM9	149 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	FRMD6	Q96NE9	622 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SGPP1	Q9BX95	441 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ASCC2	Q9H1I8	757 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PDLIM7	Q9NR12	457 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CNNM1	Q9NRU3	951 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TMOD2	Q9NZR1	351 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	THEG	Q9P2T0	379 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	RBPJL	Q9UBG7	517 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	AGTPBP1	Q9UPW5	1226 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	KCTD3	Q9Y597	815 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TACC3	Q9Y6A5	838 aa		3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	3.75	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ZNF646	O15015	1829 aa	Predicted RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106		F6X3S4	739 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	GFRA2	O00451	464 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	DDX58	O95786	925 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	LDHB	P07195	334 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ZNF853	P0CG23	659 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ACR	P10323	421 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	MYOG	P15173	224 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	ZKSCAN1	P17029	563 aa	Predicted RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PLCG1	P19174	1290 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	RGS3	P49796	1198 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	RABGGTB	P53611	331 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	RPS26	P62854	115 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	HDLBP	Q00341	1268 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CHRNE	Q04844	493 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	NEXN	Q0ZGT2	675 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	DUSP4	Q13115	394 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	FKBP1C	Q5VVH2	108 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	HHIPL2	Q6UWX4	724 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	CCDC129	Q6ZRS4	1044 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TSPYL5	Q86VY4	417 aa	Predicted RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	VPS37D	Q86XT2	251 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	MCAT	Q8IVS2	390 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TMEM151B	Q8IW70	566 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	GPRC5A	Q8NFJ5	357 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	KLHDC4	Q8TBB5	520 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PPP1R13L	Q8WUF5	828 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	MRI	Q9BWK5	157 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	GPR62	Q9BZJ7	368 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	DDX4	Q9NQI0	724 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	DDX20	Q9UHI6	824 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	YBX2	Q9Y2T7	364 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	SLC45A1	Q9Y2W3	748 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	PCDHA11	Q9Y5I1	949 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	LRRFIP2	Q9Y608	721 aa	Known RBP	3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TRIO	O75962	3097 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	LAMB4	A4D0S4	1761 aa		3.74	□□□□□ -1.81
CHMP4A-208	ENST00000534106	TEX51	A0A1B0GUA7	166 aa		3.73	□□□□□ -1.81
CHMP4A-208	ENST00000534106	MYOCOS	A0A1B0GUC4	107 aa		3.73	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms