RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 C5orf67F2Z3F1 127 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 MARCH6O60337 910 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 DTNBO60941 627 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 GPR32O75388 356 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 SARSP49591 514 aaKnown RBP17.39■□□□□ 0.37
CPSF1-211ENST00000533492 NLRP11P59045 1033 aaKnown RBP17.39■□□□□ 0.37
CPSF1-211ENST00000533492 TBC1D8BQ0IIM8 1120 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 UGCGQ16739 394 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 PAN2Q504Q3 1202 aaKnown RBP17.39■□□□□ 0.37
CPSF1-211ENST00000533492 NEK8Q86SG6 692 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 CMTR2Q8IYT2 770 aaKnown RBP17.39■□□□□ 0.37
CPSF1-211ENST00000533492 LRRC71Q8N4P6 559 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 NECAB1Q8N987 351 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 CLP1Q92989 425 aaKnown RBP17.39■□□□□ 0.37
CPSF1-211ENST00000533492 MBOAT7Q96N66 472 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 ADAM2Q99965 735 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 C1orf112Q9NSG2 853 aa17.39■□□□□ 0.37
CPSF1-211ENST00000533492 RALGAPA2Q2PPJ7 1873 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 CTDNEP1O95476 244 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 NEK4P51957 841 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 XKR3Q5GH77 459 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 PIK3AP1Q6ZUJ8 805 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 SLC24A5Q71RS6 500 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 ETNPPLQ8TBG4 499 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 SCLT1Q96NL6 688 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 NAP1L4Q99733 375 aaKnown RBP17.38■□□□□ 0.37
CPSF1-211ENST00000533492 PLVAPQ9BX97 442 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 LMAN2LQ9H0V9 348 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 NSUN3Q9H649 340 aaKnown RBP17.38■□□□□ 0.37
CPSF1-211ENST00000533492 UBE2ZQ9H832 354 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-211ENST00000533492 BRMS1Q9HCU9 246 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 RGS18Q9NS28 235 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 GJB4Q9NTQ9 266 aa17.38■□□□□ 0.37
CPSF1-211ENST00000533492 SEPT9Q9UHD8 586 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-211ENST00000533492 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-211ENST00000533492 SLC37A4O43826 429 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 MGEA5O60502 916 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 CCNT1O60563 726 aaKnown RBP17.37■□□□□ 0.37
CPSF1-211ENST00000533492 GCFC2P16383 781 aaKnown RBP17.37■□□□□ 0.37
CPSF1-211ENST00000533492 ME3Q16798 604 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 MTERF2Q49AM1 385 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 TCEAL5Q5H9L2 206 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 PPP4R3AQ6IN85 833 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 EP400NLQ6ZTU2 488 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 FAM228AQ86W67 206 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 CRIPAKQ8N1N5 446 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 FAM20AQ96MK3 541 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 NECAB3Q96P71 396 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-211ENST00000533492 NIFKQ9BYG3 293 aaKnown RBP17.37■□□□□ 0.37
CPSF1-211ENST00000533492 MRPL42Q9Y6G3 142 aaKnown RBP17.37■□□□□ 0.37
CPSF1-211ENST00000533492 NCOR1O75376 2440 aa17.37■□□□□ 0.37
CPSF1-211ENST00000533492 BRWD1Q9NSI6 2320 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 SPTBN5Q9NRC6 3674 aaKnown RBP17.36■□□□□ 0.37
CPSF1-211ENST00000533492 DDX11L8A8MPP1 907 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 GRM6O15303 877 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 LINC00271P0C7V0 271 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 ZSCAN20P17040 1043 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-211ENST00000533492 KCNA5P22460 613 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 EIF4BP23588 611 aaKnown RBP17.36■□□□□ 0.37
CPSF1-211ENST00000533492 KRT2P35908 639 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 DNM2P50570 870 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 PSMC5P62195 406 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 SPOUT1Q5T280 376 aaKnown RBP17.36■□□□□ 0.37
CPSF1-211ENST00000533492 B3GNT9Q6UX72 402 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 LINC01465Q8N7H1 131 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 OXER1Q8TDS5 423 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 GTF3C6Q969F1 213 aa17.36■□□□□ 0.37
CPSF1-211ENST00000533492 ZNF668Q96K58 619 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-211ENST00000533492 MYO7AQ13402 2215 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 C9IYK1 514 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 DKC1O60832 514 aaKnown RBP eCLIP17.35■□□□□ 0.37
CPSF1-211ENST00000533492 BAG4O95429 457 aaKnown RBP17.35■□□□□ 0.37
CPSF1-211ENST00000533492 FDPSP14324 419 aaKnown RBP17.35■□□□□ 0.37
CPSF1-211ENST00000533492 GATMP50440 423 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 GPC3P51654 580 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 CDC42EP1Q00587 391 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 TARBP2Q15633 366 aaKnown RBP17.35■□□□□ 0.37
CPSF1-211ENST00000533492 NAALADL2Q58DX5 795 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 NLRP7Q8WX94 980 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 P2RX5Q93086 422 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 ADAMTS10Q9H324 1103 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 ATP6V0A4Q9HBG4 840 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 ALG13Q9NP73 1137 aaKnown RBP17.35■□□□□ 0.37
CPSF1-211ENST00000533492 PLAGL2Q9UPG8 496 aa17.35■□□□□ 0.37
CPSF1-211ENST00000533492 XIRP2A4UGR9 3374 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 TBKBP1A7MCY6 615 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 TBX3O15119 743 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 NCK2O43639 380 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 CSPG5O95196 566 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 LARGE1O95461 756 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 SEC24BO95487 1268 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 QARSP47897 775 aaKnown RBP17.34■□□□□ 0.37
CPSF1-211ENST00000533492 PPP2R5CQ13362 524 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 TRIM29Q14134 588 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 LEXMQ3ZCV2 418 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 FAM102BQ5T8I3 360 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 SH2D3AQ9BRG2 576 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 KCNMB3Q9NPA1 279 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 AAASQ9NRG9 546 aa17.34■□□□□ 0.37
CPSF1-211ENST00000533492 TMEM161AQ9NX61 479 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms