RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 H0Y858 1186 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 ARVCFO00192 962 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 GSTA4O15217 222 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 C6orf222P0C671 652 aaPredicted RBP5.71□□□□□ -1.5
CD44-235ENST00000532339 FAM153BP0C7A2 387 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 PTPN1P18031 435 aaKnown RBP5.71□□□□□ -1.5
CD44-235ENST00000532339 GJA4P35212 333 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 ST5P78524 1137 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 DBPQ10586 325 aaPredicted RBP5.71□□□□□ -1.5
CD44-235ENST00000532339 ZC3H12BQ5HYM0 836 aaKnown RBP5.71□□□□□ -1.5
CD44-235ENST00000532339 FOXB2Q5VYV0 432 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 DPP8Q6V1X1 898 aaPredicted RBP5.71□□□□□ -1.5
CD44-235ENST00000532339 REXO1L1PQ8IX06 675 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 PCDH19Q8TAB3 1148 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 LRRC59Q96AG4 307 aaKnown RBP5.71□□□□□ -1.5
CD44-235ENST00000532339 AJUBAQ96IF1 538 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 EXOC2Q96KP1 924 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 DHRS4Q9BTZ2 278 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 SPON1Q9HCB6 807 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 RIC8BQ9NVN3 520 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 ST6GALNAC2Q9UJ37 374 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 KDM2BQ8NHM5 1336 aa5.71□□□□□ -1.5
CD44-235ENST00000532339 APPP05067 770 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 PDE6AP16499 860 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 CRY1Q16526 586 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 FAM47CQ5HY64 1035 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 FIGNQ5HY92 759 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 C16orf59Q7L2K0 433 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 IFNL2Q8IZJ0 200 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 KISS1RQ969F8 398 aaPredicted RBP5.7□□□□□ -1.5
CD44-235ENST00000532339 TACO1Q9BSH4 297 aaKnown RBP5.7□□□□□ -1.5
CD44-235ENST00000532339 ARHGAP28Q9P2N2 729 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 MRPS23Q9Y3D9 190 aaKnown RBP5.7□□□□□ -1.5
CD44-235ENST00000532339 ATP23Q9Y6H3 246 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 A2MP01023 1474 aa5.7□□□□□ -1.5
CD44-235ENST00000532339 KDM5AP29375 1690 aaKnown RBP5.69□□□□□ -1.5
CD44-235ENST00000532339 ADGBQ8N7X0 1667 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 PNPLA6Q8IY17 1366 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 GPR42O15529 346 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 IL18BPO95998 194 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 PYGMP11217 842 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 KRT15P19012 456 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 CSF2RBP32927 897 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 SERINC3Q13530 473 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 RASA3Q14644 834 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 ICAM4Q14773 271 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 DRC1Q96MC2 740 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 DEPDC7Q96QD5 511 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 CDK5RAP1Q96SZ6 601 aaKnown RBP5.69□□□□□ -1.5
CD44-235ENST00000532339 KATNBL1Q9H079 304 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 SEC61A2Q9H9S3 476 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 SLC39A2Q9NP94 309 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 SLC4A7Q9Y6M7 1214 aa5.69□□□□□ -1.5
CD44-235ENST00000532339 SPHKAPQ2M3C7 1700 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 CHD4Q14839 1912 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 FAM90A27PA6NNH2 459 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 MAN2B1O00754 1011 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 KCNQ2O43526 872 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 CUTAO60888 179 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 EFCAB14O75071 495 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 AMY2AP04746 511 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 SRGAP2CP0DJJ0 459 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 TNFRSF1AP19438 455 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 AMY2BP19961 511 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 RBL2Q08999 1139 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 USP10Q14694 798 aaKnown RBP5.68□□□□□ -1.5
CD44-235ENST00000532339 BRINP3Q76B58 766 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 OSTM1Q86WC4 334 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 PTRH1Q86Y79 214 aaKnown RBP5.68□□□□□ -1.5
CD44-235ENST00000532339 ZC3H7AQ8IWR0 971 aaKnown RBP5.68□□□□□ -1.5
CD44-235ENST00000532339 DNERQ8NFT8 737 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 KLC2Q9H0B6 622 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 MEGF9Q9H1U4 602 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 TMPRSS5Q9H3S3 457 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 CBLCQ9ULV8 474 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 TSC22D4Q9Y3Q8 395 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 PCDHA9Q9Y5H5 950 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 EID1Q9Y6B2 187 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 NCOA2Q15596 1464 aa5.68□□□□□ -1.5
CD44-235ENST00000532339 SAMD9Q5K651 1589 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 PTCH1Q13635 1447 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 NCOA3Q9Y6Q9 1424 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.67□□□□□ -1.5
CD44-235ENST00000532339 CCDC66A2RUB6 948 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 ZNF561-AS1K7EIQ3 104 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 MATN3O15232 486 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 CNOT4O95628 575 aaKnown RBP5.67□□□□□ -1.5
CD44-235ENST00000532339 CRTAMO95727 393 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 POLD1P28340 1107 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 DNM2P50570 870 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 JAM2P57087 298 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 SF3A1Q15459 793 aaKnown RBP5.67□□□□□ -1.5
CD44-235ENST00000532339 ZNF568Q3ZCX4 644 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 SOGA3Q5TF21 947 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 GPR155Q7Z3F1 870 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 PTPN18Q99952 460 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 CARD11Q9BXL7 1154 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 DEF6Q9H4E7 631 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 CD248Q9HCU0 757 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 SNTG2Q9NY99 539 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms