RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 ZNF610Q8N9Z0 462 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 WDR66Q8TBY9 1149 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 ZNF496Q96IT1 587 aaPredicted RBP6.58□□□□□ -1.36
CD44-230ENST00000528922 SCYL1Q96KG9 808 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 FOXB1Q99853 325 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 BTBD2Q9BX70 525 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 SEMA4AQ9H3S1 761 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 APOBEC2Q9Y235 224 aaKnown RBP6.58□□□□□ -1.36
CD44-230ENST00000528922 AQRO60306 1485 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-230ENST00000528922 PHLDB1Q86UU1 1377 aa6.58□□□□□ -1.36
CD44-230ENST00000528922 DIP2BQ9P265 1576 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 UBA6A0AVT1 1052 aaPredicted RBP6.57□□□□□ -1.36
CD44-230ENST00000528922 CYP7B1O75881 506 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 PRLP01236 227 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 CPEP16870 476 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 LSP1P33241 339 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 RGS3P49796 1198 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 CDKN1CP49918 316 aaPredicted RBP6.57□□□□□ -1.36
CD44-230ENST00000528922 TMPRSS15P98073 1019 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 SLC6A3Q01959 620 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 ADCY1Q08828 1119 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 KANK2Q63ZY3 851 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 TRMT10BQ6PF06 316 aaKnown RBP6.57□□□□□ -1.36
CD44-230ENST00000528922 NME9Q86XW9 330 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 ZZZ3Q8IYH5 903 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 CLRN3Q8NCR9 226 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 E2F7Q96AV8 911 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 MAML3Q96JK9 1138 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 SPATA25Q9BR10 227 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 GOLGA2P5Q9HBQ8 144 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 VTA1Q9NP79 307 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 SETD5Q9C0A6 1442 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 CARMIL1Q5VZK9 1371 aa6.57□□□□□ -1.36
CD44-230ENST00000528922 CFAP43Q8NDM7 1665 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 ARHGAP35Q9NRY4 1499 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.56□□□□□ -1.36
CD44-230ENST00000528922 KLHL18O94889 574 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 CHGBP05060 677 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 CDK11BP21127 795 aaKnown RBP6.56□□□□□ -1.36
CD44-230ENST00000528922 CD40P25942 277 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 SLURP1P55000 103 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 TTC38Q5R3I4 469 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 LCNL1Q6ZST4 164 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 NUDT10Q8NFP7 164 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 NUDT11Q96G61 164 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 YTHDC1Q96MU7 727 aaKnown RBP6.56□□□□□ -1.36
CD44-230ENST00000528922 TUBGCP5Q96RT8 1024 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 BRINP2Q9C0B6 783 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 OR10A5Q9H207 317 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 POFUT1Q9H488 388 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 MCM8Q9UJA3 840 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 FMN1Q68DA7 1419 aa6.56□□□□□ -1.36
CD44-230ENST00000528922 ABCC10Q5T3U5 1492 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 FYCO1Q9BQS8 1478 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 ZSCAN22P10073 491 aaPredicted RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 EVA1CP58658 441 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 CD83Q01151 205 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 MYBPC3Q14896 1274 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 RNF219Q5W0B1 726 aaPredicted RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 MCTP2Q6DN12 878 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 SLFN12LQ6IEE8 588 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 DPP8Q6V1X1 898 aaPredicted RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 HDGFL2Q7Z4V5 671 aaPredicted RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 RASSF3Q86WH2 238 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 ZNF761Q86XN6 746 aaPredicted RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 KRTAP19-1Q8IUB9 90 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 PRPF38AQ8NAV1 312 aaKnown RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 TXNDC5Q8NBS9 432 aaKnown RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 ZSCAN18Q8TBC5 510 aaPredicted RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 ZCRB1Q8TBF4 217 aaKnown RBP6.55□□□□□ -1.36
CD44-230ENST00000528922 CALML6Q8TD86 181 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 ADAMTS17Q8TE56 1095 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 MYL10Q9BUA6 226 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 ZDHHC5Q9C0B5 715 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 L2HGDHQ9H9P8 463 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 MSRAQ9UJ68 235 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 LRRC9Q6ZRR7 1453 aa6.55□□□□□ -1.36
CD44-230ENST00000528922 H0Y858 1186 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 ELL2O00472 640 aaPredicted RBP6.54□□□□□ -1.36
CD44-230ENST00000528922 TRIM13O60858 407 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 ULK1O75385 1050 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 PRPF6O94906 941 aaKnown RBP6.54□□□□□ -1.36
CD44-230ENST00000528922 ROM1Q03395 351 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 NOLC1Q14978 699 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-230ENST00000528922 PDCD1Q15116 288 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 WDR72Q3MJ13 1102 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 PRAMEF9Q5VWM5 478 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 UNQ6494/PRO21346Q6UXR6 183 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 CXXC5Q7LFL8 322 aaKnown RBP6.54□□□□□ -1.36
CD44-230ENST00000528922 KANSL1Q7Z3B3 1105 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 SPATS2Q86XZ4 545 aaKnown RBP6.54□□□□□ -1.36
CD44-230ENST00000528922 PHYKPLQ8IUZ5 450 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 C7orf31Q8N865 590 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 COG1Q8WTW3 980 aa6.54□□□□□ -1.36
CD44-230ENST00000528922 TOPORSQ9NS56 1045 aaPredicted RBP6.54□□□□□ -1.36
CD44-230ENST00000528922 PRKD3O94806 890 aa6.53□□□□□ -1.36
CD44-230ENST00000528922 APEX1P27695 318 aaKnown RBP6.53□□□□□ -1.36
CD44-230ENST00000528922 ADCY8P40145 1251 aa6.53□□□□□ -1.36
CD44-230ENST00000528922 SESN3P58005 492 aa6.53□□□□□ -1.36
CD44-230ENST00000528922 IQSEC1Q6DN90 963 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms