RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GNPTABQ3T906 1256 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 PRR16Q569H4 304 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 OLFML2BQ68BL8 750 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 ZNF787Q6DD87 383 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 PLA2G4DQ86XP0 818 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 GIMAP8Q8ND71 665 aaPredicted RBP8.34□□□□□ -1.07
CD44-228ENST00000528455 CYP2W1Q8TAV3 490 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 HAS1Q92839 578 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 LENG9Q96B70 501 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 MAML3Q96JK9 1138 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 AK8Q96MA6 479 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 INPP4AQ96PE3 977 aaPredicted RBP8.34□□□□□ -1.07
CD44-228ENST00000528455 RIT2Q99578 217 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 SENP7Q9BQF6 1050 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 TINF2Q9BSI4 451 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 RNF208Q9H0X6 261 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 KCNH7Q9NS40 1196 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 TBC1D22BQ9NU19 505 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 LMBRD1Q9NUN5 540 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 PCDHA7Q9UN72 937 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 KIAA1217Q5T5P2 1943 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 ASTN1O14525 1302 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 SYNGAP1Q96PV0 1343 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 A0A1W2PQ27 194 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 A0A1W2PQ64 194 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 A0A1W2PQD8 194 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 RBM47A0AV96 593 aaKnown RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 GOLGA6L4A6NEF3 574 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 MSH4O15457 936 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 FIBPO43427 364 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 MARCH6O60337 910 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 TDP2O95551 362 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 IGHA2P01877 340 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 OR52Z1P0C646 297 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 ARP10275 920 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 CCL5P13501 91 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 ITGB5P18084 799 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 CMA1P23946 247 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 MARCKSP29966 332 aaPredicted RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 LONP1P36776 959 aaKnown RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 ME1P48163 572 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 PSMA6P60900 246 aaKnown RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 UBE2HP62256 183 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 MTMR1Q13613 665 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 SKOR2Q2VWA4 1001 aaPredicted RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 KCTD17Q8N5Z5 321 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 SLC5A5Q92911 643 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 CHAMP1Q96JM3 812 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 FGD4Q96M96 766 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 RAB34Q9BZG1 259 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 WDR11Q9BZH6 1224 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 TMEM60Q9H2L4 133 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 ABHD16BQ9H3Z7 469 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 TTC12Q9H892 705 aaPredicted RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 FBXO2Q9UK22 296 aaPredicted RBP8.33□□□□□ -1.08
CD44-228ENST00000528455 LCTP09848 1927 aa8.33□□□□□ -1.08
CD44-228ENST00000528455 FAM237AA0A1B0GTK4 181 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 SLC35F4A4IF30 521 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 IPO5O00410 1097 aaKnown RBP8.32□□□□□ -1.08
CD44-228ENST00000528455 EML1O00423 815 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 SLC26A4O43511 780 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 SLC37A4O43826 429 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 PSMD10O75832 226 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 SNAI1O95863 264 aaPredicted RBP8.32□□□□□ -1.08
CD44-228ENST00000528455 GJB1P08034 283 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 ELNP15502 786 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 CAPN2P17655 700 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 NOS2P35228 1153 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 TXKP42681 527 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 PLA2G4AP47712 749 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 GJA8P48165 433 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 NFKBIBQ15653 356 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 IL17AQ16552 155 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 TMEM266Q2M3C6 531 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 AXDND1Q5T1B0 1012 aaPredicted RBP8.32□□□□□ -1.08
CD44-228ENST00000528455 SH3PXD2AQ5TCZ1 1133 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 IQSEC1Q6DN90 963 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 IGSF22Q8N9C0 903 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 IL31RAQ8NI17 732 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 NPLOC4Q8TAT6 608 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 ETNPPLQ8TBG4 499 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 ZNF577Q9BSK1 485 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 C2orf49Q9BVC5 232 aaPredicted RBP8.32□□□□□ -1.08
CD44-228ENST00000528455 FTOQ9C0B1 505 aaKnown RBP eCLIP8.32□□□□□ -1.08
CD44-228ENST00000528455 AGO4Q9HCK5 861 aaKnown RBP8.32□□□□□ -1.08
CD44-228ENST00000528455 VTA1Q9NP79 307 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 TIMMDC1Q9NPL8 285 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 NRBP1Q9UHY1 535 aa8.32□□□□□ -1.08
CD44-228ENST00000528455 NFASCO94856 1347 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 ZNF236Q9UL36 1845 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 SERTM1A2A2V5 107 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 DHX15O43143 795 aaKnown RBP8.31□□□□□ -1.08
CD44-228ENST00000528455 SGPL1O95470 568 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 CYP2B6P20813 491 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 MUTP22033 750 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 TECP42680 631 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 PPP2R5CQ13362 524 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 ACVR2BQ13705 512 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 NEDD9Q14511 834 aa8.31□□□□□ -1.08
CD44-228ENST00000528455 TAPT1Q6NXT6 567 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms