RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 EPHA1P21709 976 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 CNGA1P29973 690 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 PDIA3P30101 505 aaKnown RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 DGKGP49619 791 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 PLCD1P51178 756 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 CACNB3P54284 484 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 NUCB2P80303 420 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 PABPC4Q13310 644 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-226ENST00000527889 PICALMQ13492 652 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 INPP5AQ14642 412 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 WTAPQ15007 396 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 ELOA3BQ3SY89 546 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 SBK1Q52WX2 424 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 BRDTQ58F21 947 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 ZC3H12BQ5HYM0 836 aaKnown RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 FAM47AQ5JRC9 791 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 C12orf60Q5U649 245 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 CDCP2Q5VXM1 449 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 FOXB2Q5VYV0 432 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 APOBEC3HQ6NTF7 200 aaKnown RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 HHIPL2Q6UWX4 724 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 NFXL1Q6ZNB6 911 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 CHSY3Q70JA7 882 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 NLRC3Q7RTR2 1065 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 MICU3Q86XE3 530 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 DDX42Q86XP3 938 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-226ENST00000527889 CCDC144CPQ8IYA2 1237 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 NSUN7Q8NE18 718 aaKnown RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 ELOA3Q8NG57 546 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 IGDCC4Q8TDY8 1250 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 CHAC2Q8WUX2 184 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 KLHL6Q8WZ60 621 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 TNFRSF25Q93038 417 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 PLPPR2Q96GM1 343 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 SLC9A7Q96T83 725 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 LPIN3Q9BQK8 851 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 EPN3Q9H201 632 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 TAOK3Q9H2K8 898 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 RNF41Q9H4P4 317 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 SOX17Q9H6I2 414 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 ARPP21Q9UBL0 812 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 PCDHB10Q9UN67 800 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 ANGEL1Q9UNK9 670 aaKnown RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 SNCAIPQ9Y6H5 919 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 TNKSO95271 1327 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 EVPLQ92817 2033 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 CCDC163A0A0D9SF12 145 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 PTPDC1A2A3K4 754 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 VPS37CA5D8V6 355 aaPredicted RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 CCDC69A6NI79 296 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 GOLGA8AA7E2F4 631 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 H3BRJ5 948 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 STX6O43752 255 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 WDHD1O75717 1129 aaPredicted RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 BAG4O95429 457 aaKnown RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 SLC3A2P08195 630 aaKnown RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 PLCG1P19174 1290 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 SYT1P21579 422 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 CDC27P30260 824 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ADH7P40394 386 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 METAP2P50579 478 aaKnown RBP eCLIP4.79□□□□□ -1.64
CD44-226ENST00000527889 FKBP1AP62942 108 aaKnown RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 CXCL9Q07325 125 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 PDE4BQ07343 736 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 TCP10Q12799 353 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 NFIAQ12857 509 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 CBX2Q14781 532 aaPredicted RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 SEC23AQ15436 765 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 CFAP100Q494V2 611 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 TMEM201Q5SNT2 666 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 KIAA1211LQ6NV74 962 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ELMSAN1Q6PJG2 1045 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 APOA5Q6Q788 366 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 LINC00114Q6XXX2 140 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ZFPM1Q8IX07 1006 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 AMOTL1Q8IY63 956 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 LRRC47Q8N1G4 583 aaKnown RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 FBXL16Q8N461 479 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ENAHQ8N8S7 591 aaPredicted RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 ESR2Q92731 530 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 KISS1RQ969F8 398 aaPredicted RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 CHMP4CQ96CF2 233 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ZNF274Q96GC6 653 aaPredicted RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 SGSM3Q96HU1 749 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 TMEM87BQ96K49 555 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ZDHHC15Q96MV8 337 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 CEP89Q96ST8 783 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 UBAC1Q9BSL1 405 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 NRSN2Q9GZP1 204 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 TDRD3Q9H7E2 651 aaKnown RBP4.79□□□□□ -1.64
CD44-226ENST00000527889 CAAP1Q9H8G2 361 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 RRAGCQ9HB90 399 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 ENAMQ9NRM1 1142 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 KRT82Q9NSB4 513 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 FRRS1LQ9P0K9 344 aa4.79□□□□□ -1.64
CD44-226ENST00000527889 CNTNAP1P78357 1384 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 MYO3BQ8WXR4 1341 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 WDR33Q9C0J8 1336 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 CLRN2A0PK11 232 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms