RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 CXCL14O95715 111 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 RPLP2P05387 115 aaKnown RBP13.29□□□□□ -0.28
SDCBP-211ENST00000523441 SART3Q15020 963 aaKnown RBP13.29□□□□□ -0.28
SDCBP-211ENST00000523441 ANGPT1Q15389 498 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 LONRF3Q496Y0 759 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 CWF19L1Q69YN2 538 aaKnown RBP13.29□□□□□ -0.28
SDCBP-211ENST00000523441 TMC5Q6UXY8 1006 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 FAM228AQ86W67 206 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 PLEKHM2Q8IWE5 1019 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 CKAP2LQ8IYA6 745 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 RIN2Q8WYP3 895 aaPredicted RBP13.29□□□□□ -0.28
SDCBP-211ENST00000523441 TNPO1Q92973 898 aaKnown RBP13.29□□□□□ -0.28
SDCBP-211ENST00000523441 RMDN1Q96DB5 314 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 CASD1Q96PB1 797 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 NGRNQ9NPE2 291 aaKnown RBP13.29□□□□□ -0.28
SDCBP-211ENST00000523441 JADE2Q9NQC1 790 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 KCNH7Q9NS40 1196 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 TMEM161AQ9NX61 479 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 SPG21Q9NZD8 308 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 R4GN57 208 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 GVINP1Q7Z2Y8 2422 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.28□□□□□ -0.28
SDCBP-211ENST00000523441 HIP1O00291 1037 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 PIK3CDO00329 1044 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 MYBP10242 640 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 EPCAMP16422 314 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 MTHFRP42898 656 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 ITIH3Q06033 890 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 NFXL1Q6ZNB6 911 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 DGLUCYQ7Z3D6 616 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 HEATR3Q7Z4Q2 680 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 TICAM2Q86XR7 235 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 KIAA0319LQ8IZA0 1049 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 SIX5Q8N196 739 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 NME8Q8N427 588 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 RASGRP4Q8TDF6 673 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 HELQQ8TDG4 1101 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 NECTIN4Q96NY8 510 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 TMEM117Q9H0C3 514 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 LZTS1Q9Y250 596 aa13.28□□□□□ -0.28
SDCBP-211ENST00000523441 MYH9P35579 1960 aaKnown RBP13.28□□□□□ -0.28
SDCBP-211ENST00000523441 ZNF292O60281 2723 aa13.27□□□□□ -0.28
SDCBP-211ENST00000523441 C2orf16Q68DN1 1984 aa13.27□□□□□ -0.28
SDCBP-211ENST00000523441 C2orf71A6NGG8 1288 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 E7EWF7 191 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 CYP21A2P08686 494 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 KIF5BP33176 963 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 CLCN5P51795 746 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 PLCB3Q01970 1234 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 SPECC1Q5M775 1068 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 ATAT1Q5SQI0 421 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 ZNF654Q8IZM8 581 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 LRRC43Q8N309 656 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 DTWD2Q8NBA8 298 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 NCOA7Q8NI08 942 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 KDM3AQ9Y4C1 1321 aa13.27□□□□□ -0.29
SDCBP-211ENST00000523441 DMXL1Q9Y485 3027 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 KRT37O76014 449 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 SSBP05455 408 aaKnown RBP eCLIP13.26□□□□□ -0.29
SDCBP-211ENST00000523441 CFHP08603 1231 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 FGFR4P22455 802 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 PPM1AP35813 382 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 ZNF76P36508 570 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 ANTXR2P58335 489 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 PTH1RQ03431 593 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 ITGB3BPQ13352 177 aaPredicted RBP13.26□□□□□ -0.29
SDCBP-211ENST00000523441 ODR4Q5SWX8 454 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 FAM160B1Q5W0V3 765 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 PDXDC2PQ6P474 469 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 PLPPR4Q7Z2D5 763 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 DENND4AQ7Z401 1863 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 CHD1LQ86WJ1 897 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 VPS52Q8N1B4 723 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 SRBD1Q8N5C6 995 aaKnown RBP13.26□□□□□ -0.29
SDCBP-211ENST00000523441 MRPL43Q8N983 215 aaKnown RBP13.26□□□□□ -0.29
SDCBP-211ENST00000523441 SCLT1Q96NL6 688 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 MXRA8Q9BRK3 442 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 SPZ1Q9BXG8 430 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 RNF19AQ9NV58 838 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 AKT3Q9Y243 479 aa13.26□□□□□ -0.29
SDCBP-211ENST00000523441 U3KPZ7 1027 aaPredicted RBP13.26□□□□□ -0.29
SDCBP-211ENST00000523441 NARSO43776 548 aaKnown RBP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 HBP1O60381 514 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 ZC3H11AO75152 810 aaKnown RBP eCLIP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 EOMESO95936 686 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 ZSCAN20P17040 1043 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 NPR3P17342 541 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 AOC1P19801 751 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 CLCN3P51790 818 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 CRYBB1P53674 252 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 HDAC1Q13547 482 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 CLLU1OSQ5K130 101 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 SWSAP1Q6NVH7 229 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 CABP7Q86V35 215 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 CCDC60Q8IWA6 550 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 CCDC105Q8IYK2 499 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 ZDHHC14Q8IZN3 488 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 ACSF2Q96CM8 615 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-211ENST00000523441 TMEM169Q96HH4 297 aa13.25□□□□□ -0.29
SDCBP-211ENST00000523441 GBP3Q9H0R5 595 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms