RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 TNNI2P48788 182 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 TUFMP49411 452 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 PLS1Q14651 629 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 TMC3Q7Z5M5 1100 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ZC3H18Q86VM9 953 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 PIAS4Q8N2W9 510 aaPredicted RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 SLC44A5Q8NCS7 719 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 SH3RF3Q8TEJ3 882 aaPredicted RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 SAP30BPQ9UHR5 308 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 STX2P32856 288 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 LONP1P36776 959 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 BIRC3Q13489 604 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ALKBH5Q6P6C2 394 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 KCTD17Q8N5Z5 321 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 RDH13Q8NBN7 331 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 NEK9Q8TD19 979 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 SNX29Q8TEQ0 813 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ANKS1AQ92625 1134 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 DDX12PQ92771 950 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 NUDCD1Q96RS6 583 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 CORO1CQ9ULV4 474 aaPredicted RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ITSN1Q15811 1721 aa10.9□□□□□ -0.67
PDGFRB-207ENST00000520579 RTL9Q8NET4 1388 aa10.9□□□□□ -0.67
PDGFRB-207ENST00000520579 PIAS1O75925 651 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 CNNM4Q6P4Q7 775 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 PTF1AQ7RTS3 328 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 CCDC84Q86UT8 332 aaPredicted RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 LMNTD2Q8IXW0 634 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 ARHGAP18Q8N392 663 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 UCMAQ8WVF2 138 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 MKL1Q969V6 931 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 POP1Q99575 1024 aaKnown RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 NUDT12Q9BQG2 462 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 MXD3Q9BW11 206 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 FGFBP2Q9BYJ0 223 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 MCM9Q9NXL9 1143 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 ZNF711Q9Y462 761 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 DAAM1Q9Y4D1 1078 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 PCDHB13Q9Y5F0 798 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 N6AMT1Q9Y5N5 214 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 LRRN2O75325 713 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 ENTPD5O75356 428 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 SMNDC1O75940 238 aaKnown RBP eCLIP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 PMS2P54278 862 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 HERC4Q5GLZ8 1057 aaPredicted RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 ZFYVE27Q5T4F4 411 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 RNF10Q8N5U6 811 aaKnown RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 DYDC2Q96IM9 177 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 ALG13Q9NP73 1137 aaKnown RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 SIK3Q9Y2K2 1263 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 MYH15Q9Y2K3 1946 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 C3P01024 1663 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 CLIC2O15247 247 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 DNAJC8O75937 253 aaPredicted RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 CIAO1O76071 339 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 RHOBTB3O94955 611 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 DR1Q01658 176 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 CBX3Q13185 183 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 NPY5RQ15761 445 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 TBC1D10BQ4KMP7 808 aaPredicted RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 LRP10Q7Z4F1 713 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 SRRM1Q8IYB3 904 aaKnown RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 MAIP1Q8WWC4 291 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 BAP1Q92560 729 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 MKNK2Q9HBH9 465 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 KCNQ5Q9NR82 932 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 ADAM22Q9P0K1 906 aa10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 TMA7Q9Y2S6 64 aaKnown RBP10.89□□□□□ -0.67
PDGFRB-207ENST00000520579 A0A1W2PRG0 241 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 RASGRF2O14827 1237 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 FAM200BP0CF97 657 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TFAP4Q01664 338 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 KCNMA1Q12791 1236 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 MTMR3Q13615 1198 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 NAB2Q15742 525 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ZNF394Q53GI3 561 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ERMARDQ5T6L9 678 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 MEI1Q5TIA1 1274 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ZNF746Q6NUN9 644 aaPredicted RBP10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 KRT28Q7Z3Y7 464 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 C18orf8Q96DM3 657 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 NR1H4Q96RI1 486 aaPredicted RBP10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TFCP2L1Q9NZI6 479 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 LNPEPQ9UIQ6 1025 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 H0YGN5 161 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 SUN1O94901 812 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 SERPING1P05155 500 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 RCN2Q14257 317 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 PUS10Q3MIT2 529 aaKnown RBP10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 RASIP1Q5U651 963 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 PRUNE1Q86TP1 453 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 SLF2Q8IX21 1173 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 CCDC105Q8IYK2 499 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 CNBD1Q8NA66 436 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 SPOCK2Q92563 424 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ERP27Q96DN0 273 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 CYTH2Q99418 400 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 IKZF4Q9H2S9 585 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TMEM98Q9Y2Y6 226 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms