RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 DDX11L8A8MPP1 907 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 ZBTB39O15060 712 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 DKC1O60832 514 aaKnown RBP eCLIP10.89□□□□□ -0.67
RNF4-221ENST00000513643 AMHP03971 560 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 CA3P07451 260 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 LINC00271P0C7V0 271 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 MCM7P33993 719 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 TXKP42681 527 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 FXR2P51116 673 aaKnown RBP eCLIP10.89□□□□□ -0.67
RNF4-221ENST00000513643 CLCN3P51790 818 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 FAM189BP81408 668 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 TMEM62Q0P6H9 643 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 DSC3Q14574 896 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 ZNF174Q15697 407 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 TTC38Q5R3I4 469 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 PIAS4Q8N2W9 510 aaPredicted RBP10.89□□□□□ -0.67
RNF4-221ENST00000513643 NEK9Q8TD19 979 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 SNX21Q969T3 373 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 INTS4Q96HW7 963 aaKnown RBP10.89□□□□□ -0.67
RNF4-221ENST00000513643 DYDC2Q96IM9 177 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 FAM161BQ96MY7 647 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 LXNQ9BS40 222 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 FTHL17Q9BXU8 183 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 SLC28A3Q9HAS3 691 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 CYP26B1Q9NR63 512 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.89□□□□□ -0.67
RNF4-221ENST00000513643 NOC2LQ9Y3T9 749 aaKnown RBP10.89□□□□□ -0.67
RNF4-221ENST00000513643 KIF3AQ9Y496 699 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.89□□□□□ -0.67
RNF4-221ENST00000513643 MICAL3Q7RTP6 2002 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 EVPLQ92817 2033 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 COL4A6Q14031 1691 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 TLL1O43897 1013 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 MGEA5O60502 916 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 VTNP04004 478 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 OR52Z1P0C646 297 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 TMOD1P28289 359 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 YWHABP31946 246 aaKnown RBP10.88□□□□□ -0.67
RNF4-221ENST00000513643 GPC3P51654 580 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 NPEPPSP55786 919 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 CDC42EP1Q00587 391 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 TBC1D8BQ0IIM8 1120 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 ADGRE1Q14246 886 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 CTTNQ14247 550 aaKnown RBP10.88□□□□□ -0.67
RNF4-221ENST00000513643 PDIA5Q14554 519 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 NBR1Q14596 966 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 IL17AQ16552 155 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 KIZQ2M2Z5 673 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 NCAPH2Q6IBW4 605 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 FAM228AQ86W67 206 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 CATSPER3Q86XQ3 398 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 LRRC71Q8N4P6 559 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 METTL13Q8N6R0 699 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 IGSF22Q8N9C0 903 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 ZNF689Q96CS4 500 aaPredicted RBP10.88□□□□□ -0.67
RNF4-221ENST00000513643 SH2D3AQ9BRG2 576 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 POLR3CQ9BUI4 534 aaPredicted RBP10.88□□□□□ -0.67
RNF4-221ENST00000513643 ANKEF1Q9NU02 776 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 SEPT9Q9UHD8 586 aaPredicted RBP10.88□□□□□ -0.67
RNF4-221ENST00000513643 INSL6Q9Y581 213 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 PCDHB6Q9Y5E3 794 aa10.88□□□□□ -0.67
RNF4-221ENST00000513643 LINC01553A4QN01 128 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 EPOPA6NHQ4 379 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 POTEMA6NI47 508 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 M0QZ92 97 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 LPXNO60711 386 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 DARSP14868 501 aaKnown RBP10.87□□□□□ -0.67
RNF4-221ENST00000513643 ATP2B1P20020 1258 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 MUTP22033 750 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 EIF4BP23588 611 aaKnown RBP10.87□□□□□ -0.67
RNF4-221ENST00000513643 RPA1P27694 616 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 RFC5P40937 340 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 PRPHP41219 470 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 NLRP11P59045 1033 aaKnown RBP10.87□□□□□ -0.67
RNF4-221ENST00000513643 ERVK-21P61565 698 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 PTGDRQ13258 359 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 MTERF2Q49AM1 385 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 RILPL1Q5EBL4 403 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 LARP1BQ659C4 914 aaKnown RBP10.87□□□□□ -0.67
RNF4-221ENST00000513643 PLA2G4FQ68DD2 849 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 TRMT1LQ7Z2T5 733 aaKnown RBP10.87□□□□□ -0.67
RNF4-221ENST00000513643 SPRED2Q7Z698 418 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 EXOC8Q8IYI6 725 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 MYLIPQ8WY64 445 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 OSMRQ99650 979 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 JPH2Q9BR39 696 aaPredicted RBP10.87□□□□□ -0.67
RNF4-221ENST00000513643 TUFT1Q9NNX1 390 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 XPNPEP1Q9NQW7 623 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 RGS18Q9NS28 235 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 ST3GAL5Q9UNP4 418 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 SMC3Q9UQE7 1217 aa10.87□□□□□ -0.67
RNF4-221ENST00000513643 C9IYK1 514 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 LAD1O00515 517 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 GPR182O15218 404 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 MARCH6O60337 910 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 MED24O75448 989 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 RPS6KA5O75582 802 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 DGKIO75912 1065 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 TECP42680 631 aa10.86□□□□□ -0.67
RNF4-221ENST00000513643 RARRES1P49788 294 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms