RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	SLC39A11	Q8N1S5	342 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	SMARCC2	Q8TAQ2	1214 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	AUTS2	Q8WXX7	1259 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	RIN2	Q8WYP3	895 aa	Predicted RBP	12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	ZNF558	Q96NG5	402 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	KRT23	Q9C075	422 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	JADE2	Q9NQC1	790 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	DLGAP2	Q9P1A6	1054 aa		12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	DBR1	Q9UK59	544 aa	Known RBP	12.84	□□□□□ -0.35
RNF4-218	ENST00000513284	LAMA4	Q16363	1823 aa		12.83	□□□□□ -0.35
RNF4-218	ENST00000513284	GPR179	Q6PRD1	2367 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	ZBTB42	B2RXF5	422 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	NT5C1B-RDH14	C9J2C7	533 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	N4BP1	O75113	896 aa	Known RBP	12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	ATG7	O95352	703 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	CLLU1OS	Q5K130	101 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	TMC5	Q6UXY8	1006 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	FAM43B	Q6ZT52	329 aa	Predicted RBP	12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	SUMF1	Q8NBK3	374 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	RILPL2	Q969X0	211 aa		12.83	□□□□□ -0.36
RNF4-218	ENST00000513284	GPR182	O15218	404 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	GPR32	O75388	356 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	SP9	P0CG40	484 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	STAT5B	P51692	787 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	ACTR2	P61160	394 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	MTMR1	Q13613	665 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	CWC27	Q6UX04	472 aa	Known RBP	12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	GPR149	Q86SP6	731 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	TMEM173	Q86WV6	379 aa	Predicted RBP	12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	MAML2	Q8IZL2	1156 aa	Predicted RBP	12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	RSAD2	Q8WXG1	361 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	RUBCN	Q92622	972 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	CDHR1	Q96JP9	859 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	PPP1R16B	Q96T49	567 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	DSCC1	Q9BVC3	393 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	RNF216	Q9NWF9	866 aa	Predicted RBP	12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	SPTBN2	O15020	2390 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	CACNA1G	O43497	2377 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	DENND4A	Q7Z401	1863 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	CHD6	Q8TD26	2715 aa		12.82	□□□□□ -0.36
RNF4-218	ENST00000513284	FANCM	Q8IYD8	2048 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	IGKV6D-21	A0A0A0MT36	114 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	MAFG	O15525	162 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	ATP4A	P20648	1035 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	PPM1A	P35813	382 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	CRYBB1	P53674	252 aa	Predicted RBP	12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	ATXN1	P54253	815 aa	Known RBP	12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	MFAP1	P55081	439 aa	Known RBP	12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	IMMT	Q16891	758 aa	Known RBP	12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	KIZ	Q2M2Z5	673 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	ECHDC2	Q86YB7	292 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	OSMR	Q99650	979 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	ZBP1	Q9H171	429 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	IL25	Q9H293	177 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	CNNM2	Q9H8M5	875 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	JPH1	Q9HDC5	661 aa	Predicted RBP	12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	KCNH7	Q9NS40	1196 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	WNT16	Q9UBV4	365 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	SLC9A2	Q9UBY0	812 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	FBXL21	Q9UKT6	434 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	IRAK3	Q9Y616	596 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	EVPL	Q92817	2033 aa		12.81	□□□□□ -0.36
RNF4-218	ENST00000513284	CACNA1I	Q9P0X4	2223 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	POTEM	A6NI47	508 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	DCN	P07585	359 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	CFH	P08603	1231 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	GLUL	P15104	373 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	METAP2	P50579	478 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	BCAR1	P56945	870 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	ITGB3BP	Q13352	177 aa	Predicted RBP	12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	UBE2S	Q16763	222 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	POTEG	Q6S5H5	508 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	OTOP3	Q7RTS5	596 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	ZNF598	Q86UK7	904 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	VPS52	Q8N1B4	723 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	LRRC43	Q8N309	656 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	SLC44A3	Q8N4M1	653 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	BCL7C	Q8WUZ0	217 aa	Predicted RBP	12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	CUL5	Q93034	780 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	ACSF2	Q96CM8	615 aa	Predicted RBP	12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	VN1R3	Q9BXE9	311 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	AZI2	Q9H6S1	392 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	DZANK1	Q9NVP4	752 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	TAF6L	Q9Y6J9	622 aa		12.8	□□□□□ -0.36
RNF4-218	ENST00000513284	STK25	O00506	426 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	CCNE2	O96020	404 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	VTN	P04004	478 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	CTSA	P10619	480 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	TBC1D8B	Q0IIM8	1120 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	WTAP	Q15007	396 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	ABHD15	Q6UXT9	468 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	TNPO1	Q92973	898 aa	Known RBP	12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	MXRA8	Q9BRK3	442 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	PSTPIP2	Q9H939	334 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	IGSF9	Q9P2J2	1179 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	CA14	Q9ULX7	337 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	PCDHA6	Q9UN73	950 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	PCDHA8	Q9Y5H6	950 aa		12.79	□□□□□ -0.36
RNF4-218	ENST00000513284	MAP1B	P46821	2468 aa	Known RBP	12.78	□□□□□ -0.36
RNF4-218	ENST00000513284	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms