RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 WNK4Q96J92 1243 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 CLIC6Q96NY7 704 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 WRNIP1Q96S55 665 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 RBPJLQ9UBG7 517 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 SLC12A8A0AV02 714 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 ZNF20P17024 532 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 KRT15P19012 456 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 SDHAP31040 664 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 FLT3P36888 993 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 HNRNPMP52272 730 aaKnown RBP eCLIP5.28□□□□□ -1.56
NUP54-212ENST00000513248 HERVK_113P62684 666 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 VASNQ6EMK4 673 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 FAM177A1Q8N128 213 aaPredicted RBP5.28□□□□□ -1.56
NUP54-212ENST00000513248 AFAP1L2Q8N4X5 818 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 ADAMTS17Q8TE56 1095 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 BOCQ9BWV1 1114 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 BTBD7Q9P203 1132 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 CROTQ9UKG9 612 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 ATP23Q9Y6H3 246 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 YEATS2Q9ULM3 1422 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 HECW2Q9P2P5 1572 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 MYO5CQ9NQX4 1742 aa5.28□□□□□ -1.56
NUP54-212ENST00000513248 SPAG9O60271 1321 aaKnown RBP5.27□□□□□ -1.57
NUP54-212ENST00000513248 ZNF518AQ6AHZ1 1483 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 MAGI2Q86UL8 1455 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 RASSF10A6NK89 507 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 CYP7B1O75881 506 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 EYA4O95677 639 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 ZNF28P17035 718 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 BPIP17213 487 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 DHCR24Q15392 516 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 TBC1D10BQ4KMP7 808 aaPredicted RBP5.27□□□□□ -1.57
NUP54-212ENST00000513248 FAM26FQ5R3K3 315 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 PRAMEF18Q5VWM3 479 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 CD276Q5ZPR3 534 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 CNNM4Q6P4Q7 775 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 AHI1Q8N157 1196 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 C2orf69Q8N8R5 385 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 DTX3Q8N9I9 347 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 SMC1BQ8NDV3 1235 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 SLKQ9H2G2 1235 aaPredicted RBP5.27□□□□□ -1.57
NUP54-212ENST00000513248 CAAP1Q9H8G2 361 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 DLL4Q9NR61 685 aa5.27□□□□□ -1.57
NUP54-212ENST00000513248 ATP10AO60312 1499 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 FRMPD1Q5SYB0 1578 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 C9orf84Q5VXU9 1444 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 PTPDC1A2A3K4 754 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 ZNF891A8MT65 544 aaPredicted RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 DDX3XO00571 662 aaKnown RBP eCLIP5.26□□□□□ -1.57
NUP54-212ENST00000513248 KCNK3O14649 394 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 KPNA6O60684 536 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 CLSTN1O94985 981 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 MPIG6BO95866 241 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 ATP2A2P16615 1042 aaKnown RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 CANXP27824 592 aaKnown RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 KIAA2012Q0VF49 1180 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 DBPQ10586 325 aaPredicted RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 CATSPEREQ5SY80 951 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 BTBD8Q5XKL5 378 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 CC2D1AQ6P1N0 951 aaPredicted RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 EP400NLQ6ZTU2 488 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 STRA8Q7Z7C7 330 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 SLC16A11Q8NCK7 471 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 DVL3Q92997 716 aaPredicted RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 FOXRED1Q96CU9 486 aaPredicted RBP5.26□□□□□ -1.57
NUP54-212ENST00000513248 SORCS2Q96PQ0 1159 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 KCNH7Q9NS40 1196 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.26□□□□□ -1.57
NUP54-212ENST00000513248 ARHGEF40Q8TER5 1519 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 PTPRMP28827 1452 aa5.26□□□□□ -1.57
NUP54-212ENST00000513248 ZMYM4Q5VZL5 1548 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 ZNF839A8K0R7 811 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 MLLT6P55198 1093 aaPredicted RBP5.25□□□□□ -1.57
NUP54-212ENST00000513248 IRF9Q00978 393 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 SKIDA1Q1XH10 827 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 RGL3Q3MIN7 710 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 TAF7LQ5H9L4 462 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 MCTP2Q6DN12 878 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 LGI4Q8N135 537 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 NXPE1Q8N323 547 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 TXNDC5Q8NBS9 432 aaKnown RBP5.25□□□□□ -1.57
NUP54-212ENST00000513248 ZCCHC14Q8WYQ9 949 aaKnown RBP5.25□□□□□ -1.57
NUP54-212ENST00000513248 LOXL4Q96JB6 756 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 C16orf92Q96LL3 132 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 C8orf49Q96NF6 230 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 FAM126AQ9BYI3 521 aaPredicted RBP5.25□□□□□ -1.57
NUP54-212ENST00000513248 KRTAP9-8Q9BYQ0 159 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 L2HGDHQ9H9P8 463 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 CABP5Q9NP86 173 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 RIC8BQ9NVN3 520 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 SPO11Q9Y5K1 396 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 PLEKHH2Q8IVE3 1493 aa5.25□□□□□ -1.57
NUP54-212ENST00000513248 VPS8Q8N3P4 1428 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 TRAPPC8Q9Y2L5 1435 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 EHBP1L1Q8N3D4 1523 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 GPATCH8Q9UKJ3 1502 aaKnown RBP5.24□□□□□ -1.57
NUP54-212ENST00000513248 RICTORQ6R327 1708 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 TGM5O43548 720 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 ENO2P09104 434 aaPredicted RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms