RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CCT8L1PA6NM43 557 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 LPXNO60711 386 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 RFX1P22670 979 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 PMLP29590 882 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 TSPY1Q01534 308 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 ADCY1Q08828 1119 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 DMC1Q14565 340 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 IKBIPQ70UQ0 350 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 PASD1Q8IV76 773 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 MB21D1Q8N884 522 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 RDH13Q8NBN7 331 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 USP33Q8TEY7 942 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM192AQ9GZU8 254 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 RUBCNLQ9H714 662 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 SLC39A2Q9NP94 309 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 HPS5Q9UPZ3 1129 aa11.96□□□□□ -0.5
LIMCH1-217ENST00000512946 CDH16O75309 829 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 PRDM1O75626 825 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 TAGAPQ8N103 731 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 NDEL1Q9GZM8 345 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 NDST4Q9H3R1 872 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 BIN2Q9UBW5 565 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ADAM30Q9UKF2 790 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 MAN1B1Q9UKM7 699 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 MAP3K5Q99683 1374 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 WDR64B1ANS9 1081 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ANKRD65E5RJM6 399 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 TSPAN9O75954 239 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 TRIM49P0CI25 452 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 TRIM49CP0CI26 452 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 GSPT1P15170 499 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 POLD1P28340 1107 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 SERPINB8P50452 374 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 TFDP1Q14186 410 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 MTHFD1LQ6UB35 978 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 HACD3Q9P035 362 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 CEP72Q9P209 647 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 G3BP2Q9UN86 482 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 MRPL11Q9Y3B7 192 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 STX7O15400 261 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 PSMA4P25789 261 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 CALML6Q8TD86 181 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 LRRC39Q96DD0 335 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM227BQ96M60 508 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 CPSF3Q9UKF6 684 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 HMOX2P30519 316 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 PTGDRQ13258 359 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ZNF827Q17R98 1081 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ARL13BQ3SXY8 428 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ARMC3Q5W041 872 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ARL6IP4Q66PJ3 421 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 LONP2Q86WA8 852 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 LINC00301Q8NCQ3 95 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 CCNYQ8ND76 341 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 ZNF556Q9HAH1 456 aa11.95□□□□□ -0.5
LIMCH1-217ENST00000512946 TRIM24O15164 1050 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SNX2O60749 519 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 XPAP23025 273 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SLC7A5Q01650 507 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 CSTF3Q12996 717 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 TRIP10Q15642 601 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 CC2D2BQ6DHV5 1058 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 C11orf57Q6ZUT1 292 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 PLBD2Q8NHP8 589 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 TBC1D22AQ8WUA7 517 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 HNRNPLLQ8WVV9 542 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 MRPL1Q9BYD6 325 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SLC40A1Q9NP59 571 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 RGL1Q9NZL6 768 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SNX24Q9Y343 169 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SP4Q02446 784 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 RTL3Q8N8U3 475 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 NRBP2Q9NSY0 501 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 TLR3O15455 904 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 PJA2O43164 708 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 DLGAP3O95886 979 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SLC9A1P19634 815 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 DSG1Q02413 1049 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 ANKRD7Q92527 254 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 FAF2Q96CS3 445 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 MCRS1Q96EZ8 462 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SNF8Q96H20 258 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 METTL22Q9BUU2 404 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 NOD2Q9HC29 1040 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 PCDHGB4Q9UN71 923 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 NOD1Q9Y239 953 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 ATP8B3O60423 1300 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SPAG6O75602 509 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SOX5P35711 763 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 SERPINB9P50453 376 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 KRT31Q15323 416 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 XAGE2Q96GT9 111 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 ANKRD36BP1Q96IX9 119 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 CHAMP1Q96JM3 812 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 ETAA1Q9NY74 926 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 BTBD7Q9P203 1132 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 AQRO60306 1485 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 MROH5Q6ZUA9 1318 aa11.94□□□□□ -0.5
LIMCH1-217ENST00000512946 PNMA8CA0A1B0GUJ8 204 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ASNA1O43681 348 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms