RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PHF20L1A8MW92 1017 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 G3V3G9 751 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 PRKCIP41743 596 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 DRAP1Q14919 205 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 LLGL1Q15334 1064 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 DCAF8Q5TAQ9 597 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 ZC3H3Q8IXZ2 948 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM186BQ8IYM0 893 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 GPATCH11Q8N954 259 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 TYW1Q9NV66 732 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 DNAJC12Q9UKB3 198 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 IGSF9BQ9UPX0 1349 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC188H7C350 402 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 TGFB1I1O43294 461 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 LRRN2O75325 713 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 BBOX1O75936 387 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 AADACL2Q6P093 401 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CABS1Q96KC9 395 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CALR3Q96L12 384 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 METTL14Q9HCE5 456 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 TMOD4Q9NZQ9 345 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 SLC12A6Q9UHW9 1150 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 UTP11Q9Y3A2 253 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 MSH4O15457 936 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 GDF11O95390 407 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 UBXN2AP68543 259 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 SPRED3Q2MJR0 410 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 EPM2AIP1Q7L775 607 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 PALB2Q86YC2 1186 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 NAP1L4Q99733 375 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 TAS2R14Q9NYV8 317 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 SUCLA2Q9P2R7 463 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 SNX24Q9Y343 169 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 RABGAP1Q9Y3P9 1069 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 GOLGA6L7A0A1B0GV03 622 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 KDM4FA0A1W2PPD8 638 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 BTNL10A8MVZ5 291 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM13AO94988 1023 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 ZBTB48P10074 688 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 RBM5P52756 815 aaKnown RBP eCLIP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 LRIG3Q6UXM1 1119 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC121Q6ZUS5 278 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 TMC3Q7Z5M5 1100 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 SPICE1Q8N0Z3 855 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 RAPGEF5Q92565 580 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 LENG9Q96B70 501 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 ARHGEF26Q96DR7 871 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC114Q96M63 670 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 DNAJC18Q9H819 358 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 DDX20Q9UHI6 824 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 STRCQ7RTU9 1775 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 TMEM110-MUSTN1A8MSY1 372 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 PLTPP55058 493 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 PPP2R2AP63151 447 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 EMC10Q5UCC4 262 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CPLX4Q7Z7G2 160 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CNPY4Q8N129 248 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 PRPF38AQ8NAV1 312 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 CTNNBL1Q8WYA6 563 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 EIF2AK1Q9BQI3 630 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 STXBP5LQ9Y2K9 1186 aa10.06□□□□□ -0.8
LIMCH1-215ENST00000512632 F5H6K3 240 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 FERP16591 822 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 KLRC3Q07444 240 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CERKLQ49MI3 558 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 MAEAQ7L5Y9 396 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 SLFN11Q7Z7L1 901 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 KIAA0825Q8IV33 1275 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC13Q8IYE1 715 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 AMNQ9BXJ7 453 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CD248Q9HCU0 757 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 KCNQ5Q9NR82 932 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 LRRC4BQ9NT99 713 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 PLIN4Q96Q06 1357 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CES2O00748 559 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 RINT1Q6NUQ1 792 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 TRMT1LQ7Z2T5 733 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 FBXO11Q86XK2 927 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 SYCE1Q8N0S2 351 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 FMO2Q99518 471 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 JPH2Q9BR39 696 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 ERVK-5Q9HDB9 667 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 PNMA2Q9UL42 364 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 NAV1Q8NEY1 1877 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CYP3A7-CYP3A51PA0A087WV96 503 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 DDTLA6NHG4 134 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 FSBPO95073 299 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 KRT13P13646 458 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 TNFAIP3P21580 790 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CYP3A7P24462 503 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 USP8P40818 1118 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 MKRN4PQ13434 485 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CRY2Q49AN0 593 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CBWD6Q4V339 395 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CBWD3Q5JTY5 395 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CBWD5Q5RIA9 395 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 SPATS2Q86XZ4 545 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 HES6Q96HZ4 224 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 THAP2Q9H0W7 228 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 F8VZ95 297 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms