RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 RNF19AQ9NV58 838 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 COL1A2P08123 1366 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 CYP3A7-CYP3A51PA0A087WV96 503 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 M0QZ92 97 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 RPS6KA5O75582 802 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 RB1P06400 928 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 FGFR1P11362 822 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 FGFR4P22455 802 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 CYP3A7P24462 503 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 CRYBB1P53674 252 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 NLRP11P59045 1033 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 RBM10P98175 930 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 SETQ01105 290 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 TARBP2Q15633 366 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 PTPROQ16827 1216 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 PTCRAQ6ISU1 281 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 EP400NLQ6ZTU2 488 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 SMAP1Q8IYB5 467 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 CMTR2Q8IYT2 770 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 BLIDQ8IZY5 108 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 CCDC12Q8WUD4 166 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 PABPC5Q96DU9 382 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 MBOAT7Q96N66 472 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 FTHL17Q9BXU8 183 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 NSUN3Q9H649 340 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 IGFLR1Q9H665 355 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 SAMM50Q9Y512 469 aa12.64□□□□□ -0.39
LIMCH1-214ENST00000512228 FAM205CA6NFA0 338 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 EML1O00423 815 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 SLC37A4O43826 429 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 SEC24BO95487 1268 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 FDPSP14324 419 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 SARSP49591 514 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 CLUL1Q15846 466 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 INF2Q27J81 1249 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 Q4G0T1 1027 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 MCTP2Q6DN12 878 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 CCDC148Q8NFR7 591 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 ETNPPLQ8TBG4 499 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 TNPO1Q92973 898 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 RIT2Q99578 217 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 CLDND1Q9NY35 253 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 PCDHB7Q9Y5E2 793 aa12.63□□□□□ -0.39
LIMCH1-214ENST00000512228 FAM86C2PA6NEL3 165 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 WDR64B1ANS9 1081 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 EPB41L2O43491 1005 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 GAS7O60861 476 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 TBX10O75333 385 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 DEXIO95424 95 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 LARGE1O95461 756 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 OATP04181 439 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 ERVFC1P60507 584 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 PRKCEQ02156 737 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 ADAM15Q13444 863 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 LRCH2Q5VUJ6 765 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 SLC24A5Q71RS6 500 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 NECAB1Q8N987 351 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 DAGLBQ8NCG7 672 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 BICD2Q8TD16 824 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 POF1BQ8WVV4 589 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 LRFN3Q9BTN0 628 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 C11orf84Q9BUA3 381 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 PHF20Q9BVI0 1012 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 CWH43Q9H720 699 aa12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 TYW1Q9NV66 732 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 WRAP73Q9P2S5 460 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-214ENST00000512228 TBKBP1A7MCY6 615 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 PI4K2BG5E9Z4 385 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 ZBTB39O15060 712 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 GPR182O15218 404 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 PFKFB2O60825 505 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 MMP1P03956 469 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 RPLP2P05387 115 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 TIGD5Q53EQ6 642 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 ANO5Q75V66 913 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 RBM23Q86U06 439 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 KSR1Q8IVT5 923 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 TRIM22Q8IYM9 498 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 GJD3Q8N144 294 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 HAS1Q92839 578 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 P2RX5Q93086 422 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 CASD1Q96PB1 797 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 PLVAPQ9BX97 442 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 TEKT3Q9BXF9 490 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 NIFKQ9BYG3 293 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 NRBP2Q9NSY0 501 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 CLEC1BQ9P126 229 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 LRFN2Q9ULH4 789 aa12.61□□□□□ -0.39
LIMCH1-214ENST00000512228 IGKV6-21A0A0C4DH24 114 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 DENND3A2RUS2 1198 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 WNT7AO00755 349 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 CPLX1O14810 134 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 PER2O15055 1255 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 MAGEB2O15479 319 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 STAG3L1P0CL83 205 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 EIF4BP23588 611 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 PBX3P40426 434 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 GPC3P51654 580 aa12.6□□□□□ -0.39
LIMCH1-214ENST00000512228 AK2P54819 239 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms