RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 PPP2R5BQ15173 497 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 CEP135Q66GS9 1140 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 RNF207Q6ZRF8 634 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 NEK10Q6ZWH5 1172 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 PXYLP1Q8TE99 480 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 GPKOWQ92917 476 aaPredicted RBP eCLIP12.71□□□□□ -0.37
BRCA1-222ENST00000493919 CUL5Q93034 780 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 PHKBQ93100 1093 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 ZNF274Q96GC6 653 aaPredicted RBP12.71□□□□□ -0.37
BRCA1-222ENST00000493919 DCAF16Q9NXF7 216 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 CYP39A1Q9NYL5 469 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 FLRT1Q9NZU1 646 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 TMED5Q9Y3A6 229 aa12.71□□□□□ -0.37
BRCA1-222ENST00000493919 MRPL11Q9Y3B7 192 aaKnown RBP12.71□□□□□ -0.37
BRCA1-222ENST00000493919 MKI67P46013 3256 aaKnown RBP12.71□□□□□ -0.37
BRCA1-222ENST00000493919 LARGE1O95461 756 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CFBP00751 764 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 HOXC6P09630 235 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 MATR3P43243 847 aaKnown RBP eCLIP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 UBXN2AP68543 259 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CNTN2Q02246 1040 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 TRIM32Q13049 653 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 BAATQ14032 418 aaPredicted RBP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CEP57L1Q8IYX8 460 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 SLC7A5P1Q8MH63 180 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 MAML3Q96JK9 1138 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 SLC26A6Q9BXS9 759 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 ALDH8A1Q9H2A2 487 aaPredicted RBP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CFAP45Q9UL16 551 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 TTLL3Q9Y4R7 772 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 LCTP09848 1927 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 STAM2O75886 525 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 IDO1P14902 403 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 FERP16591 822 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CCT8P50990 548 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 ARPC4P59998 168 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 RPS6P62753 249 aaKnown RBP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CTAG1AP78358 180 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 AKAP17AQ02040 695 aaKnown RBP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 FUT2Q10981 343 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 CUL4BQ13620 913 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 ZNF792Q3KQV3 632 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 EMC10Q5UCC4 262 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 MTHFD1LQ6UB35 978 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 BRAPQ7Z569 592 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 REXO1L1PQ8IX06 675 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 PURBQ96QR8 312 aaKnown RBP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 GMEB1Q9Y692 573 aa12.7□□□□□ -0.38
BRCA1-222ENST00000493919 V9GY48 417 aaPredicted RBP12.7□□□□□ -0.38
BRCA1-222ENST00000493919 DNAJC25-GNG10A0A024R161 153 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 CCDC85CA6NKD9 419 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 ST18O60284 1047 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 DTNBO60941 627 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 TBCAO75347 108 aaKnown RBP12.69□□□□□ -0.38
BRCA1-222ENST00000493919 FGFR1OPO95684 399 aaKnown RBP12.69□□□□□ -0.38
BRCA1-222ENST00000493919 PRKAR2AP13861 404 aaKnown RBP12.69□□□□□ -0.38
BRCA1-222ENST00000493919 MCM3P25205 808 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 COX10Q12887 443 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 MTFR1Q15390 333 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 ME3Q16798 604 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 MFSD14CQ5VZR4 134 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 MCF2L2Q86YR7 1114 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 TRMT44Q8IYL2 757 aaKnown RBP12.69□□□□□ -0.38
BRCA1-222ENST00000493919 NECAB1Q8N987 351 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 MAGEC3Q8TD91 643 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 WHAMMQ8TF30 809 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 GTF3C6Q969F1 213 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 ZNF333Q96JL9 665 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 RNPC3Q96LT9 517 aaKnown RBP12.69□□□□□ -0.38
BRCA1-222ENST00000493919 SPO11Q9Y5K1 396 aa12.69□□□□□ -0.38
BRCA1-222ENST00000493919 BIRC3Q13489 604 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 CCDC122Q5T0U0 273 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 TMC6Q7Z403 805 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 APLFQ8IW19 511 aaPredicted RBP12.68□□□□□ -0.38
BRCA1-222ENST00000493919 TRIM22Q8IYM9 498 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 UBXN4Q92575 508 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 ARMC5Q96C12 935 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 LRRC45Q96CN5 670 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 ZNF304Q9HCX3 659 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 SEPT10Q9P0V9 454 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.68□□□□□ -0.384e-6■■□□□ 13.9
BRCA1-222ENST00000493919 GOLGA6L10A0A0M3HER8 536 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 OPLAHO14841 1288 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 PFKFB2O60825 505 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 IFNAR1P17181 557 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 HOXA13P31271 388 aaPredicted RBP12.68□□□□□ -0.38
BRCA1-222ENST00000493919 NAPAP54920 295 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 NTRK3Q16288 839 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 MUM1Q2TAK8 710 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 OLFML2BQ68BL8 750 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 FAM133AQ8N9E0 248 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 SPDL1Q96EA4 605 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 NAF1Q96HR8 494 aaKnown RBP12.68□□□□□ -0.38
BRCA1-222ENST00000493919 CDHR1Q96JP9 859 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 TINF2Q9BSI4 451 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 TCHPQ9BT92 498 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 PARD6BQ9BYG5 372 aa12.68□□□□□ -0.38
BRCA1-222ENST00000493919 MCM3APO60318 1980 aa12.67□□□□□ -0.38
BRCA1-222ENST00000493919 SOWAHBA6NEL2 793 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms