RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ARHGEF16Q5VV41 709 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 GALNT17Q6IS24 598 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 CCDC62Q6P9F0 684 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 TEX2Q8IWB9 1127 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 DIS3L2Q8IYB7 885 aaKnown RBP13.78□□□□□ -0.2
UPF3A-210ENST00000493727 CCDC155Q8N6L0 562 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 ITPKCQ96DU7 683 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 TAAR1Q96RJ0 339 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 PHF20Q9BVI0 1012 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 GLT8D2Q9H1C3 349 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 PCDHA4Q9UN74 947 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 MTMR6Q9Y217 621 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 NOD1Q9Y239 953 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 ESYT2A0FGR8 921 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 RFXAPO00287 272 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 AXIN1O15169 862 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 EIF3JO75822 258 aaKnown RBP13.77□□□□□ -0.21
UPF3A-210ENST00000493727 ARIH2O95376 493 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 GHRHRQ02643 423 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 SEPT14Q6ZU15 432 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 FERMT3Q86UX7 667 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 BLIDQ8IZY5 108 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 COPS5Q92905 334 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 SLC9A7Q96T83 725 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 ZMYND12Q9H0C1 365 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 ALG2Q9H553 416 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 PSTPIP2Q9H939 334 aa13.77□□□□□ -0.21
UPF3A-210ENST00000493727 CAPN5O15484 640 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-210ENST00000493727 ZIC2O95409 532 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-210ENST00000493727 PARNO95453 639 aaKnown RBP13.76□□□□□ -0.21
UPF3A-210ENST00000493727 BRD1O95696 1058 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 F13A1P00488 732 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 CFBP00751 764 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 MMP3P08254 477 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 HSD17B4P51659 736 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 DHX9Q08211 1270 aaKnown RBP13.76□□□□□ -0.21
UPF3A-210ENST00000493727 DGKDQ16760 1214 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 KCNV1Q6PIU1 500 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 DEFB128Q7Z7B8 93 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 SESTD1Q86VW0 696 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 REXO1Q8N1G1 1221 aaKnown RBP13.76□□□□□ -0.21
UPF3A-210ENST00000493727 CAGE1Q8TC20 777 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 AFG1LQ8WV93 481 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 TBC1D5Q92609 795 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 KATNAL1Q9BW62 490 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 ZFAND3Q9H8U3 227 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 RIC8AQ9NPQ8 531 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 PXMP2Q9NR77 195 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 COL20A1Q9P218 1284 aa13.76□□□□□ -0.21
UPF3A-210ENST00000493727 KAT6AQ92794 2004 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 CCDC194A0A1B0GVG4 234 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 BTBD18B2RXH4 712 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 GCOM1H8Y6P7 765 aaPredicted RBP13.75□□□□□ -0.21
UPF3A-210ENST00000493727 ERVH48-1M5A8F1 160 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 POLR2MP0CAP2 368 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 EIF2AK2P19525 551 aaKnown RBP13.75□□□□□ -0.21
UPF3A-210ENST00000493727 RAB15P59190 212 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 TAP1Q03518 808 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 ARHGAP1Q07960 439 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 LAMC2Q13753 1193 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 PTGISQ16647 500 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 UBE2SQ16763 222 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 LY6KQ17RY6 165 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 JAKMIP3Q5VZ66 844 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 DAGLBQ8NCG7 672 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 PHOSPHO2Q8TCD6 241 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 AFAP1L1Q8TED9 768 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 LRFN3Q9BTN0 628 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 FOXP1Q9H334 677 aaPredicted RBP13.75□□□□□ -0.21
UPF3A-210ENST00000493727 ZSCAN16Q9H4T2 348 aaPredicted RBP13.75□□□□□ -0.21
UPF3A-210ENST00000493727 EPHX3Q9H6B9 360 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 CERS4Q9HA82 394 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 COG5Q9UP83 839 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 ATP6V1DQ9Y5K8 247 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 MRVI1Q9Y6F6 885 aa13.75□□□□□ -0.21
UPF3A-210ENST00000493727 SIP14410 1827 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 KIF28PB7ZC32 967 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 LPXNO60711 386 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 BAIAP3O94812 1187 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 IQCF3P0C7M6 154 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 RESTQ13127 1097 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 FOXD4L6Q3SYB3 417 aaPredicted RBP13.74□□□□□ -0.21
UPF3A-210ENST00000493727 FOXD4L3Q6VB84 417 aaPredicted RBP13.74□□□□□ -0.21
UPF3A-210ENST00000493727 KRT25Q7Z3Z0 450 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 BRAPQ7Z569 592 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 SPRED2Q7Z698 418 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 HERC6Q8IVU3 1022 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 PHTF2Q8N3S3 785 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 PPTC7Q8NI37 304 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 RASGRP4Q8TDF6 673 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 FTOQ9C0B1 505 aaKnown RBP eCLIP13.74□□□□□ -0.21
UPF3A-210ENST00000493727 C11orf16Q9NQ32 467 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 DACH1Q9UI36 760 aa13.74□□□□□ -0.21
UPF3A-210ENST00000493727 DDX41Q9UJV9 622 aaKnown RBP13.74□□□□□ -0.21
UPF3A-210ENST00000493727 SPDYE3A6NKU9 549 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 TGFB3P10600 412 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 HOXA13P31271 388 aaPredicted RBP13.73□□□□□ -0.21
UPF3A-210ENST00000493727 CHMP4BP1P59074 171 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 SEMA3FQ13275 785 aa13.73□□□□□ -0.21
UPF3A-210ENST00000493727 GRB10Q13322 594 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms