RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TMCO3Q6UWJ1 677 aa23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 HS2ST1Q7LGA3 356 aa23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 GBP3Q9H0R5 595 aa23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 ZNF214Q9UL59 606 aaPredicted RBP23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 CAPN6Q9Y6Q1 641 aa23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 DICER1Q9UPY3 1922 aaKnown RBP23.13■■□□□ 1.29
CCDC88B-208ENST00000492980 ZRANB2O95218 330 aaKnown RBP eCLIP23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 UCHL3P15374 230 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 UGCGQ16739 394 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 XRRA1Q6P2D8 792 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 GBP6Q6ZN66 633 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 FAM133AQ8N9E0 248 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 TRIM58Q8NG06 486 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 ANKZF1Q9H8Y5 726 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 PPP2R3BQ9Y5P8 575 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 TESPA1A2RU30 521 aaPredicted RBP23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 CCNE2O96020 404 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 HIRAP54198 1017 aaPredicted RBP23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 MAEAQ7L5Y9 396 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 SIX2Q9NPC8 291 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 FHOD1Q9Y613 1164 aa23.12■■□□□ 1.29
CCDC88B-208ENST00000492980 GTPBP10A4D1E9 387 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 TACC1O75410 805 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 CCND2P30279 289 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 YWHABP31946 246 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 JAK3P52333 1124 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 GPC2Q8N158 579 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 MSANTD4Q8NCY6 345 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 WDR90Q96KV7 1748 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 K7ENM7 598 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 PPP1R12BO60237 982 aaPredicted RBP23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 SRGAP2O75044 1071 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 MOCS3O95396 460 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 MAPTP10636 758 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 ARID5AQ03989 594 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 KLHL30Q0D2K2 578 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 TMEM132BQ14DG7 1078 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 NOL9Q5SY16 702 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 VSIG10LQ86VR7 867 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 C4orf19Q8IY42 314 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 TXLNBQ8N3L3 684 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 GOLGA5Q8TBA6 731 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 GCNT4Q9P109 453 aa23.11■■□□□ 1.29
CCDC88B-208ENST00000492980 WDR64B1ANS9 1081 aa23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 SFNP31947 248 aa23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 CYP2J2P51589 502 aa23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 KRT76Q01546 638 aa23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 CATSPERGQ6ZRH7 1159 aa23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 LARSQ9P2J5 1176 aaKnown RBP23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 FBXL5Q9UKA1 691 aa23.1■■□□□ 1.29
CCDC88B-208ENST00000492980 POTEB2H3BUK9 544 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 NR3C2P08235 984 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 PSMC5P62195 406 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 BMS1Q14692 1282 aaKnown RBP23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 SLC18A3Q16572 532 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 CC2D1AQ6P1N0 951 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 SLC9A9Q8IVB4 645 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 SALL4Q9UJQ4 1053 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 JRKLQ9Y4A0 524 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 TMEM150BA6NC51 233 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 BACH1O14867 736 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 ATP2A1O14983 1001 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 SEC31AO94979 1220 aaKnown RBP23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 PLS3P13797 630 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 IRF2BP2Q7Z5L9 587 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 SYCP3Q8IZU3 236 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 NOA1Q8NC60 698 aaKnown RBP23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 GPRASP2Q96D09 838 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 SPAG5Q96R06 1193 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 TMOD4Q9NZQ9 345 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 AJAP1Q9UKB5 411 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 FRMD4BQ9Y2L6 1034 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 AFG3L2Q9Y4W6 797 aa23.09■■□□□ 1.29
CCDC88B-208ENST00000492980 LOC285556D6RIA3 1793 aa23.08■■□□□ 1.29
CCDC88B-208ENST00000492980 ALCAMQ13740 583 aa23.08■■□□□ 1.29
CCDC88B-208ENST00000492980 PLS1Q14651 629 aa23.08■■□□□ 1.29
CCDC88B-208ENST00000492980 SH2D3AQ9BRG2 576 aa23.08■■□□□ 1.29
CCDC88B-208ENST00000492980 KIAA1217Q5T5P2 1943 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 A0A087X0T9 212 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 FAM228BP0C875 321 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 PNMA6AP0CW24 399 aaPredicted RBP23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 JAM2P57087 298 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 ANKRD13CQ8N6S4 541 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 RBM46Q8TBY0 533 aaKnown RBP23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 CCDC43Q96MW1 224 aaKnown RBP23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 INPP4AQ96PE3 977 aaPredicted RBP23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 ALS2CR12Q96Q35 445 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 PNKPQ96T60 521 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 MMS19Q96T76 1030 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 TCEAL9Q9UHQ7 104 aa23.08■■□□□ 1.28
CCDC88B-208ENST00000492980 WDR81Q562E7 1941 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 POLR2AP24928 1970 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 FMO5P49326 533 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 MYBPC2Q14324 1141 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 ENOX2Q16206 610 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 RDM1Q8NG50 284 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 TIPINQ9BVW5 301 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 TEX13BQ9BXU2 312 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 LUC7LQ9NQ29 371 aaKnown RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms