RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 MGEA5O60502 916 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 NEMFO60524 1076 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 MCM7P33993 719 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 TXKP42681 527 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 QARSP47897 775 aaKnown RBP20.36■□□□□ 0.85
COL9A3-214ENST00000490398 NPEPPSP55786 919 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 PSMC5P62195 406 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 CYP4A11Q02928 519 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 CTTNQ14247 550 aaKnown RBP20.36■□□□□ 0.85
COL9A3-214ENST00000490398 ZNF174Q15697 407 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 SLFN12Q8IYM2 578 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 MAFAQ8NHW3 353 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-214ENST00000490398 ARNTL2Q8WYA1 636 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 FOXP1Q9H334 677 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-214ENST00000490398 ERVK-5Q9HDB9 667 aa20.36■□□□□ 0.85
COL9A3-214ENST00000490398 MYH9P35579 1960 aaKnown RBP20.35■□□□□ 0.85
COL9A3-214ENST00000490398 VCANP13611 3396 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 RPLP2P05387 115 aaKnown RBP20.35■□□□□ 0.85
COL9A3-214ENST00000490398 PAK2Q13177 524 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 FAM228AQ86W67 206 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 LXNQ9BS40 222 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 ADAMTS10Q9H324 1103 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 TTC12Q9H892 705 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-214ENST00000490398 MTUS1Q9ULD2 1270 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 AKT3Q9Y243 479 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 SQORQ9Y6N5 450 aa20.35■□□□□ 0.85
COL9A3-214ENST00000490398 A0A087WWV3 80 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 IGKV6-21A0A0C4DH24 114 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 SLITRK3O94933 977 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 BAG4O95429 457 aaKnown RBP20.34■□□□□ 0.85
COL9A3-214ENST00000490398 P4HBP07237 508 aaKnown RBP20.34■□□□□ 0.85
COL9A3-214ENST00000490398 GJB2P29033 226 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 TOB1P50616 345 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-214ENST00000490398 NLRP11P59045 1033 aaKnown RBP20.34■□□□□ 0.85
COL9A3-214ENST00000490398 TBC1D8BQ0IIM8 1120 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 NFX1Q12986 1120 aaKnown RBP20.34■□□□□ 0.85
COL9A3-214ENST00000490398 NOSTRINQ8IVI9 506 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 SP7Q8TDD2 431 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-214ENST00000490398 PCDHA12Q9UN75 941 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 ST3GAL5Q9UNP4 418 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 EVPLQ92817 2033 aa20.34■□□□□ 0.85
COL9A3-214ENST00000490398 POTEMA6NI47 508 aa20.33■□□□□ 0.85
COL9A3-214ENST00000490398 RPS6KA5O75582 802 aa20.33■□□□□ 0.85
COL9A3-214ENST00000490398 IGFBP4P22692 258 aa20.33■□□□□ 0.85
COL9A3-214ENST00000490398 CRYBB1P53674 252 aaPredicted RBP20.33■□□□□ 0.85
COL9A3-214ENST00000490398 CRIPAKQ8N1N5 446 aa20.33■□□□□ 0.85
COL9A3-214ENST00000490398 GAS2L1Q99501 681 aaPredicted RBP20.33■□□□□ 0.85
COL9A3-214ENST00000490398 EIF2AK1Q9BQI3 630 aaKnown RBP20.33■□□□□ 0.85
COL9A3-214ENST00000490398 C17orf80Q9BSJ5 609 aa20.33■□□□□ 0.85
COL9A3-214ENST00000490398 BMP2KQ9NSY1 1161 aaPredicted RBP20.33■□□□□ 0.85
COL9A3-214ENST00000490398 INSL6Q9Y581 213 aa20.33■□□□□ 0.85
COL9A3-214ENST00000490398 LPXNO60711 386 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 MAFO75444 373 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-214ENST00000490398 CSDE1O75534 798 aaKnown RBP20.32■□□□□ 0.84
COL9A3-214ENST00000490398 FGFR4P22455 802 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 U2AF2P26368 475 aaKnown RBP eCLIP20.32■□□□□ 0.84
COL9A3-214ENST00000490398 GPC3P51654 580 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 TTC38Q5R3I4 469 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 KSR1Q8IVT5 923 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 C4orf32Q8N8J7 132 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 PPM1EQ8WY54 764 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 YME1L1Q96TA2 773 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 HSD17B14Q9BPX1 270 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 RC3H2Q9HBD1 1191 aaKnown RBP20.32■□□□□ 0.84
COL9A3-214ENST00000490398 PRDM6Q9NQX0 595 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 CYP26B1Q9NR63 512 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 COL4A6Q14031 1691 aa20.32■□□□□ 0.84
COL9A3-214ENST00000490398 IBSPP21815 317 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-214ENST00000490398 GATMP50440 423 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 GRB10Q13322 594 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 CCDC85BQ15834 202 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-214ENST00000490398 TPH2Q8IWU9 490 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 C4orf19Q8IY42 314 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 GDPD5Q8WTR4 605 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 MAP7D2Q96T17 732 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 TSPYL2Q9H2G4 693 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-214ENST00000490398 LOXHD1Q8IVV2 1947 aa20.31■□□□□ 0.84
COL9A3-214ENST00000490398 TMOD1P28289 359 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 YWHABP31946 246 aaKnown RBP20.3■□□□□ 0.84
COL9A3-214ENST00000490398 MCM2P49736 904 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 ERVK-21P61565 698 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 GNL2Q13823 731 aaKnown RBP20.3■□□□□ 0.84
COL9A3-214ENST00000490398 SLC17A8Q8NDX2 589 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 CEP170P1Q96L14 293 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 ZSWIM4Q9H7M6 989 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 SUCLA2Q9P2R7 463 aaPredicted RBP20.3■□□□□ 0.84
COL9A3-214ENST00000490398 PCDHB6Q9Y5E3 794 aa20.3■□□□□ 0.84
COL9A3-214ENST00000490398 MYO9BQ13459 2157 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 LINC00271P0C7V0 271 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 SPATA31C1P0DKV0 1188 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 TECP42680 631 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 DSC3Q14574 896 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 TMEM143Q96AN5 459 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 TGS1Q96RS0 853 aaKnown RBP20.29■□□□□ 0.84
COL9A3-214ENST00000490398 ADAM2Q99965 735 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 FTHL17Q9BXU8 183 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 MTCH2Q9Y6C9 303 aa20.29■□□□□ 0.84
COL9A3-214ENST00000490398 A0A087WZ62 844 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 MED24O75448 989 aa20.28■□□□□ 0.84
COL9A3-214ENST00000490398 OR52Z1P0C646 297 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms