RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SWSAP1Q6NVH7 229 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 MIS18BP1Q6P0N0 1132 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 UPF3AQ9H1J1 476 aaKnown RBP17.61■□□□□ 0.41
SYNE1-227ENST00000489156 SPC25Q9HBM1 224 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 SLC39A2Q9NP94 309 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 KIF20AO95235 890 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 PSAPP07602 524 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 SUPT20HL2P0C7V6 817 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 CPT1AP50416 773 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 GNASQ5JWF2 1037 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 FAM26FQ5R3K3 315 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 UTP14CQ5TAP6 766 aaKnown RBP17.61■□□□□ 0.41
SYNE1-227ENST00000489156 RINT1Q6NUQ1 792 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 CCDC60Q8IWA6 550 aaPredicted RBP17.61■□□□□ 0.41
SYNE1-227ENST00000489156 C4orf19Q8IY42 314 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 BANK1Q8NDB2 785 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 PIGOQ8TEQ8 1089 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 NOC3LQ8WTT2 800 aaKnown RBP17.61■□□□□ 0.41
SYNE1-227ENST00000489156 P2RX5Q93086 422 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 IMPACTQ9P2X3 320 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 DBR1Q9UK59 544 aaKnown RBP17.61■□□□□ 0.41
SYNE1-227ENST00000489156 LRRC10BA6NIK2 292 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 BACH1O14867 736 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 PPFIA4O75335 1185 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 PSMC5P62195 406 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 DGKDQ16760 1214 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 CENPPQ6IPU0 288 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 TTI2Q6NXR4 508 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 C1orf186Q6ZWK4 172 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 SPC24Q8NBT2 197 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 PCYT2Q99447 389 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 WRAP73Q9P2S5 460 aaPredicted RBP17.6■□□□□ 0.41
SYNE1-227ENST00000489156 GABBR1Q9UBS5 961 aa17.6■□□□□ 0.41
SYNE1-227ENST00000489156 DKC1O60832 514 aaKnown RBP eCLIP17.59■□□□□ 0.41
SYNE1-227ENST00000489156 UGCGQ16739 394 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 BRDTQ58F21 947 aaPredicted RBP17.59■□□□□ 0.41
SYNE1-227ENST00000489156 HERC4Q5GLZ8 1057 aaPredicted RBP17.59■□□□□ 0.41
SYNE1-227ENST00000489156 TRIM50Q86XT4 487 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 REEP2Q9BRK0 252 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 THAP9Q9H5L6 903 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 PCDHA2Q9Y5H9 948 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 COL4A3BPQ9Y5P4 624 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 KAT6AQ92794 2004 aa17.59■□□□□ 0.41
SYNE1-227ENST00000489156 IGKV6D-21A0A0A0MT36 114 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 LGALS2P05162 132 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 ZNF286BP0CG31 522 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 HOXD8P13378 290 aaPredicted RBP17.58■□□□□ 0.41
SYNE1-227ENST00000489156 GAP43P17677 238 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 NKX3-2P78367 333 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 LRRC63Q05C16 580 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 LRRC41Q15345 812 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 TRMT1LQ7Z2T5 733 aaKnown RBP17.58■□□□□ 0.41
SYNE1-227ENST00000489156 ZSCAN30Q86W11 494 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 MYOCDQ8IZQ8 938 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 KLHDC9Q8NEP7 349 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 ANKRD20A12PQ8NF67 263 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 ZNF302Q9NR11 478 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 ODF2LQ9ULJ1 636 aa17.58■□□□□ 0.41
SYNE1-227ENST00000489156 NPHP3-ACAD11A0A0J9YXS1 232 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 MYL3P08590 195 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 GUCY2CP25092 1073 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 STAT5BP51692 787 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 PMS1P54277 932 aaKnown RBP17.58■□□□□ 0.4
SYNE1-227ENST00000489156 KCNA10Q16322 511 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 RNF180Q86T96 592 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 GLG1Q92896 1179 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 HPS3Q969F9 1004 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 RUSC1Q9BVN2 902 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 AZI2Q9H6S1 392 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 DNAH12Q6ZR08 3092 aa17.58■□□□□ 0.4
SYNE1-227ENST00000489156 A0A1B0GTH6 734 aa17.57■□□□□ 0.4
SYNE1-227ENST00000489156 TBCAO75347 108 aaKnown RBP17.57■□□□□ 0.4
SYNE1-227ENST00000489156 LGR5O75473 907 aa17.57■□□□□ 0.4
SYNE1-227ENST00000489156 GJB1P08034 283 aa17.57■□□□□ 0.4
SYNE1-227ENST00000489156 COL13A1Q5TAT6 717 aaPredicted RBP17.57■□□□□ 0.4
SYNE1-227ENST00000489156 NAP1L5Q96NT1 182 aaPredicted RBP17.57■□□□□ 0.4
SYNE1-227ENST00000489156 C16orf70Q9BSU1 422 aa17.57■□□□□ 0.4
SYNE1-227ENST00000489156 OLFML3Q9NRN5 406 aa17.57■□□□□ 0.4
SYNE1-227ENST00000489156 SEL1LQ9UBV2 794 aa17.57■□□□□ 0.4
SYNE1-227ENST00000489156 LIMA1Q9UHB6 759 aaKnown RBP17.57■□□□□ 0.4
SYNE1-227ENST00000489156 MAFBQ9Y5Q3 323 aaPredicted RBP17.57■□□□□ 0.4
SYNE1-227ENST00000489156 ARHGEF35A5YM69 484 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 TRIM49BA6NDI0 452 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 ESPNB1AK53 854 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 ZBTB39O15060 712 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 ZNF862O60290 1169 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 SGPL1O95470 568 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 FGFR1OPO95684 399 aaKnown RBP17.56■□□□□ 0.4
SYNE1-227ENST00000489156 EEF1GP26641 437 aaKnown RBP17.56■□□□□ 0.4
SYNE1-227ENST00000489156 MARK3P27448 753 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 CST5P28325 142 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-227ENST00000489156 FILIP1LQ4L180 1135 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 HSP90AA4PQ58FG1 418 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 TCP11X2Q5H9J9 407 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 FAM160B1Q5W0V3 765 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 ANKRD40Q6AI12 368 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 CCSAPQ6IQ19 270 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-227ENST00000489156 APTXQ7Z2E3 356 aaKnown RBP17.56■□□□□ 0.4
SYNE1-227ENST00000489156 CSGALNACT2Q8N6G5 542 aa17.56■□□□□ 0.4
SYNE1-227ENST00000489156 ARRDC4Q8NCT1 418 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms