RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 C5orf42Q9H799 3197 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 EPOPA6NHQ4 379 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 IPO5O00410 1097 aaKnown RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 CPLX1O14810 134 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 TLR3O15455 904 aaKnown RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 TREHO43280 583 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 PSMD10O75832 226 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 F12P00748 615 aaPredicted RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 MMP1P03956 469 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 IQCF3P0C7M6 154 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 LINC00271P0C7V0 271 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 SMIM10L2AP0DMW4 78 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 SMIM10L2BP0DMW5 78 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 RAG1P15918 1043 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 CCL23P55773 120 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 SETQ01105 290 aaPredicted RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 AKAP17AQ02040 695 aaKnown RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 GUCY1B3Q02153 619 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 PTK7Q13308 1070 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 INF2Q27J81 1249 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 FAM26DQ5JW98 314 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 ZNF746Q6NUN9 644 aaPredicted RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 CAGE1Q8TC20 777 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 TBCKQ8TEA7 893 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 RIT2Q99578 217 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 TMEM60Q9H2L4 133 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 HIPK3Q9H422 1215 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 MLXIPQ9HAP2 919 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 JPH1Q9HDC5 661 aaPredicted RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 IL23AQ9NPF7 189 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 TBC1D22BQ9NU19 505 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 ORC3Q9UBD5 711 aaPredicted RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 SLC9A2Q9UBY0 812 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 MAFBQ9Y5Q3 323 aaPredicted RBP6.49□□□□□ -1.37
CUX1-208ENST00000485792 NRCAMQ92823 1304 aa6.49□□□□□ -1.37
CUX1-208ENST00000485792 ANK1P16157 1881 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 BTBD18B2RXH4 712 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 DDX39AO00148 427 aaKnown RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 TBX3O15119 743 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 CAND2O75155 1236 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 PARNO95453 639 aaKnown RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 PFKMP08237 780 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 CKBP12277 381 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 MYOGP15173 224 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 U2AF2P26368 475 aaKnown RBP eCLIP6.48□□□□□ -1.37
CUX1-208ENST00000485792 MARK3P27448 753 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 RFC2P35250 354 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 TCF7P36402 384 aaPredicted RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 SLC26A2P50443 739 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 TOB1P50616 345 aaPredicted RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 ACTR2P61160 394 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 DEFB103AP81534 67 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 FPGSQ05932 587 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 PPIGQ13427 754 aaKnown RBP eCLIP6.48□□□□□ -1.378e-9■■■□□ 18.5
CUX1-208ENST00000485792 DRP2Q13474 957 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 CUL4AQ13619 759 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 IL17AQ16552 155 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 PTGISQ16647 500 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 KRT25Q7Z3Z0 450 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 PLA2G4DQ86XP0 818 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 SMAP1Q8IYB5 467 aaPredicted RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 CRIPAKQ8N1N5 446 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 FBXO18Q8NFZ0 1043 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 TMEM40Q8WWA1 233 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 HERVK_113Q902F9 699 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 WASF1Q92558 559 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 TMX3Q96JJ7 454 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 CHAMP1Q96JM3 812 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 GUCD1Q96NT3 240 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 ALG1Q9BT22 464 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 UBE2OQ9C0C9 1292 aaKnown RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 UNC45AQ9H3U1 944 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 SMARCAD1Q9H4L7 1026 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 ERAP1Q9NZ08 941 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 PRKAG2Q9UGJ0 569 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 YBX2Q9Y2T7 364 aaKnown RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 FCF1Q9Y324 198 aaKnown RBP6.48□□□□□ -1.37
CUX1-208ENST00000485792 KDM3AQ9Y4C1 1321 aa6.48□□□□□ -1.37
CUX1-208ENST00000485792 COL1A2P08123 1366 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 LCHNA4D1U4 455 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 ZBTB39O15060 712 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 GCFC2P16383 781 aaKnown RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 MCM2P49736 904 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 NLRP5P59047 1200 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 HMGN5P82970 282 aaKnown RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 SMAD3P84022 425 aaKnown RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 KRT76Q01546 638 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 PPP2R5CQ13362 524 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 PLCB4Q15147 1175 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 NONOQ15233 471 aaKnown RBP eCLIP6.47□□□□□ -1.37
CUX1-208ENST00000485792 TARBP2Q15633 366 aaKnown RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 PRR16Q569H4 304 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 ZNF618Q5T7W0 954 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 KRT40Q6A162 431 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 FAM43BQ6ZT52 329 aaPredicted RBP6.47□□□□□ -1.37
CUX1-208ENST00000485792 ZNF365Q70YC5 407 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 TMEM199Q8N511 208 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 C7orf31Q8N865 590 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 C4orf32Q8N8J7 132 aa6.47□□□□□ -1.37
CUX1-208ENST00000485792 RDM1Q8NG50 284 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms