RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZNF165P49910 485 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 CDC42EP1Q00587 391 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 COASYQ13057 564 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 PLCB4Q15147 1175 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 PPP2R5AQ15172 486 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 FSCN1Q16658 493 aaKnown RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 HERC4Q5GLZ8 1057 aaPredicted RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 FAM26FQ5R3K3 315 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 UTP14CQ5TAP6 766 aaKnown RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 DYMQ7RTS9 669 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 GUF1Q8N442 669 aaKnown RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 RETREG2Q8NC44 543 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 TRPV1Q8NER1 839 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 STAMQ92783 540 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 HVCN1Q96D96 273 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 DHTKD1Q96HY7 919 aaPredicted RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 NTPCRQ9BSD7 190 aaKnown RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 RUSC1Q9BVN2 902 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 ST6GALNAC4Q9H4F1 302 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 DDX20Q9UHI6 824 aaKnown RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 IGKV6-21A0A0C4DH24 114 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 GOLGA6L3A6NEY3 463 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 EIF3DO15371 548 aaKnown RBP eCLIP11.25□□□□□ -0.61
USP39-215ENST00000481409 ASAP2O43150 1006 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 MAFO75444 373 aaPredicted RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 ECM2O94769 699 aaPredicted RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 GNAT1P11488 350 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 PLS3P13797 630 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 PRKCSHP14314 528 aaPredicted RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 CNGA1P29973 690 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 CTCFP49711 727 aaPredicted RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 DNM2P50570 870 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 SMTNP53814 917 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 POLGP54098 1239 aaPredicted RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 TPM4P67936 248 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 CAP1Q01518 475 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 TBC1D8BQ0IIM8 1120 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 MXD4Q14582 209 aaPredicted RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 ANO6Q4KMQ2 910 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 IER5Q5VY09 327 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 RNF180Q86T96 592 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 SPIRE2Q8WWL2 714 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 CEP89Q96ST8 783 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 TSEN34Q9BSV6 310 aaKnown RBP11.25□□□□□ -0.61
USP39-215ENST00000481409 XPNPEP3Q9NQH7 507 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 PCDHB13Q9Y5F0 798 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 NRCAMQ92823 1304 aa11.25□□□□□ -0.61
USP39-215ENST00000481409 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 FSD2A1L4K1 749 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 MOXD2PA6NHM9 499 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 BECN2A8MW95 431 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 HAS3O00219 553 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 BIN1O00499 593 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 ZBTB39O15060 712 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 ADCY6O43306 1168 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 SORBS3O60504 671 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 USO1O60763 962 aaKnown RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 HIP1RO75146 1068 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 INHAP05111 366 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 C6orf222P0C671 652 aaPredicted RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 ELNP15502 786 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 TMOD1P28289 359 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 CASP1P29466 404 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 SNRPFP62306 86 aaKnown RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 POU5F1BQ06416 359 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 DMP1Q13316 513 aaPredicted RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 EMC2Q15006 297 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 BMT2Q1RMZ1 405 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 DPCR1Q3MIW9 517 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 MTERF2Q49AM1 385 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 GNASQ5JWF2 1037 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 GJC2Q5T442 439 aaPredicted RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 PLA2G4FQ68DD2 849 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 CTU1Q7Z7A3 348 aaKnown RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 FAM178BQ8IXR5 827 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 ADSSL1Q8N142 457 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 MYCT1Q8N699 235 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 ARRDC4Q8NCT1 418 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 KLHDC9Q8NEP7 349 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 ENOX1Q8TC92 643 aaKnown RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 ERCC4Q92889 916 aaPredicted RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 IFT74Q96LB3 600 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 MTG1Q9BT17 334 aaPredicted RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 CGNQ9P2M7 1197 aaKnown RBP11.24□□□□□ -0.61
USP39-215ENST00000481409 RWDD2AQ9UIY3 292 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 TRPC6Q9Y210 931 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 PCDHA2Q9Y5H9 948 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 PTCH2Q9Y6C5 1203 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 MYH11P35749 1972 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 SYNRGQ9UMZ2 1314 aa11.24□□□□□ -0.61
USP39-215ENST00000481409 PPP1R3GB7ZBB8 358 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 GOLGA6L19H0YKK7 550 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 PITPNM1O00562 1244 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 ADAMTS4O75173 837 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 FGFR1OPO95684 399 aaKnown RBP11.23□□□□□ -0.61
USP39-215ENST00000481409 BMP6P22004 513 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 NAMPTP43490 491 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 MRE11P49959 708 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 NPEPPSP55786 919 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 PURAQ00577 322 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms