RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 RAVER2Q9HCJ3 691 aaKnown RBP5.67□□□□□ -1.5
PTCD3-213ENST00000480102 SRA1Q9HD15 236 aaKnown RBP5.67□□□□□ -1.5
PTCD3-213ENST00000480102 A1CFQ9NQ94 594 aaKnown RBP5.67□□□□□ -1.5
PTCD3-213ENST00000480102 INCENPQ9NQS7 918 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 RNF146Q9NTX7 359 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 RBM28Q9NW13 759 aaKnown RBP5.67□□□□□ -1.5
PTCD3-213ENST00000480102 BIN2Q9UBW5 565 aaPredicted RBP5.67□□□□□ -1.5
PTCD3-213ENST00000480102 SALL4Q9UJQ4 1053 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 FAM184BQ9ULE4 1060 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 CCPG1Q9ULG6 757 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 CNPY2Q9Y2B0 182 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 NR2E3Q9Y5X4 410 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 PTPRFP10586 1907 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 ELP1O95163 1332 aa5.67□□□□□ -1.5
PTCD3-213ENST00000480102 CDK5RAP2Q96SN8 1893 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 MYH1P12882 1939 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 CASP8AP2Q9UKL3 1982 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 KLRF2D3W0D1 207 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 MAFGO15525 162 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 PRC1O43663 620 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 KPNA6O60684 536 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 ADAMTS4O75173 837 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 TNFRSF21O75509 655 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 FARP2O94887 1054 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-213ENST00000480102 FURINP09958 794 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 RARBP10826 455 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 BMP8BP34820 402 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 GJA9P57773 515 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 ACVR2BQ13705 512 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 DOC2BQ14184 412 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 CDC37Q16543 378 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-213ENST00000480102 ECM1Q16610 540 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 CCL14Q16627 93 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 TMEM67Q5HYA8 995 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 IQSEC1Q6DN90 963 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 CCSAPQ6IQ19 270 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-213ENST00000480102 ADGRF4Q8IZF3 695 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 FANCBQ8NB91 859 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 PCSK9Q8NBP7 692 aaKnown RBP5.66□□□□□ -1.5
PTCD3-213ENST00000480102 KLHDC9Q8NEP7 349 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 NSUN6Q8TEA1 469 aaKnown RBP5.66□□□□□ -1.5
PTCD3-213ENST00000480102 SNX29Q8TEQ0 813 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 PMEPA1Q969W9 287 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 USP26Q9BXU7 913 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 PBX4Q9BYU1 374 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 MUC3BQ9H195 1237 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 FLRT1Q9NZU1 646 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 SLC12A7Q9Y666 1083 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 FRMPD4Q14CM0 1322 aa5.66□□□□□ -1.5
PTCD3-213ENST00000480102 RANBP2P49792 3224 aaKnown RBP5.66□□□□□ -1.5
PTCD3-213ENST00000480102 RBBP6Q7Z6E9 1792 aaKnown RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 ESYT2A0FGR8 921 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 K7ELQ4 463 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 EN2P19622 333 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 CYP2C19P33261 490 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 SOX10P56693 466 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 RPS6P62753 249 aaKnown RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 IKQ13123 557 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 PLS1Q14651 629 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 QRICH1Q2TAL8 776 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 DUSP28Q4G0W2 176 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 TTBK2Q6IQ55 1244 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 APOA5Q6Q788 366 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 IGF2-ASQ6U949 168 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 ADAMTSL4Q6UY14 1074 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 SYNE3Q6ZMZ3 975 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 RNF207Q6ZRF8 634 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 ARMCX2Q7L311 632 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 ANKRD33Q7Z3H0 272 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 RNF180Q86T96 592 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 MAP4K3Q8IVH8 894 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 ZNF654Q8IZM8 581 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 CPXCR1Q8N123 301 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 SLC43A3Q8NBI5 491 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 TRPV1Q8NER1 839 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 CTCFLQ8NI51 663 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 SCFD2Q8WU76 684 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 NUP133Q8WUM0 1156 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 ZNF274Q96GC6 653 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-213ENST00000480102 LACRTQ9GZZ8 138 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 PRO3102Q9H379 93 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 SPC25Q9HBM1 224 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 TPSG1Q9NRR2 321 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 PPME1Q9Y570 386 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 TAF6LQ9Y6J9 622 aa5.65□□□□□ -1.5
PTCD3-213ENST00000480102 MYH7P12883 1935 aa5.65□□□□□ -1.51
PTCD3-213ENST00000480102 MYO5AQ9Y4I1 1855 aaKnown RBP5.64□□□□□ -1.51
PTCD3-213ENST00000480102 RLFQ13129 1914 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 CCDC69A6NI79 296 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 DLL1O00548 723 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 NFIBO00712 420 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 CYTH3O43739 400 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 ZEB2O60315 1214 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 PHACTR2O75167 634 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 EIF3JO75822 258 aaKnown RBP5.64□□□□□ -1.51
PTCD3-213ENST00000480102 FOSP01100 380 aaPredicted RBP5.64□□□□□ -1.51
PTCD3-213ENST00000480102 TFRCP02786 760 aaKnown RBP5.64□□□□□ -1.51
PTCD3-213ENST00000480102 ALAS1P13196 640 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 ACPPP15309 386 aa5.64□□□□□ -1.51
PTCD3-213ENST00000480102 RPS6KB1P23443 525 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms