RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 CDH22Q9UJ99 828 aa19.59■□□□□ 0.73
VIM-204ENST00000478746 BACH1O14867 736 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 PPM1AP35813 382 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 ITGB3BPQ13352 177 aaPredicted RBP19.58■□□□□ 0.72
VIM-204ENST00000478746 KIZQ2M2Z5 673 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 ZNF484Q5JVG2 852 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 FAM160B1Q5W0V3 765 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 CCDC82Q8N4S0 544 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 PPP1R16BQ96T49 567 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 MFSD1Q9H3U5 465 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 AGO4Q9HCK5 861 aaKnown RBP19.58■□□□□ 0.72
VIM-204ENST00000478746 SPG21Q9NZD8 308 aa19.58■□□□□ 0.72
VIM-204ENST00000478746 IGKV6D-21A0A0A0MT36 114 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 CCDC69A6NI79 296 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 HOXA2O43364 376 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 MTHFRP42898 656 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 DSC3Q14574 896 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 CEP55Q53EZ4 464 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 HEATR3Q7Z4Q2 680 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 FAM228AQ86W67 206 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 ABI1Q8IZP0 508 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 MRPL43Q8N983 215 aaKnown RBP19.57■□□□□ 0.72
VIM-204ENST00000478746 NKD2Q969F2 451 aaPredicted RBP19.57■□□□□ 0.72
VIM-204ENST00000478746 OSMRQ99650 979 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 HCFC2Q9Y5Z7 792 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 COL1A2P08123 1366 aa19.57■□□□□ 0.72
VIM-204ENST00000478746 VPS13AQ96RL7 3174 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 CALM1P0DP23 149 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 CALM2P0DP24 149 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 CALM3P0DP25 149 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 RXRAP19793 462 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 PBX3P40426 434 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 SMC1AQ14683 1233 aaKnown RBP19.56■□□□□ 0.72
VIM-204ENST00000478746 PDXDC2PQ6P474 469 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 ABHD15Q6UXT9 468 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 ERMP1Q7Z2K6 904 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 FRMD5Q7Z6J6 570 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 MTA3Q9BTC8 594 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 SMOC2Q9H3U7 446 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 LIMD1Q9UGP4 676 aa19.56■□□□□ 0.72
VIM-204ENST00000478746 C2orf71A6NGG8 1288 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 DDX39AO00148 427 aaKnown RBP19.55■□□□□ 0.72
VIM-204ENST00000478746 MEIS1O00470 390 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 PRC1O43663 620 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 GPR32O75388 356 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 CCNE2O96020 404 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 ASGR2P07307 311 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 CHMLP26374 656 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 CLCN5P51795 746 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 LRRC43Q8N309 656 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 METTL13Q8N6R0 699 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 ZNF302Q9NR11 478 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 RNF19AQ9NV58 838 aa19.55■□□□□ 0.72
VIM-204ENST00000478746 CLASP2O75122 1294 aaKnown RBP19.54■□□□□ 0.72
VIM-204ENST00000478746 FOSP01100 380 aaPredicted RBP19.54■□□□□ 0.72
VIM-204ENST00000478746 VTNP04004 478 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 WEE2P0C1S8 567 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 ZSCAN20P17040 1043 aaPredicted RBP19.54■□□□□ 0.72
VIM-204ENST00000478746 CA8P35219 290 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 ID4P47928 161 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 BMS1Q14692 1282 aaKnown RBP19.54■□□□□ 0.72
VIM-204ENST00000478746 MCTP2Q6DN12 878 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 SWSAP1Q6NVH7 229 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 CCDC60Q8IWA6 550 aaPredicted RBP19.54■□□□□ 0.72
VIM-204ENST00000478746 CKAP2LQ8IYA6 745 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 ZDHHC14Q8IZN3 488 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 ADSSL1Q8N142 457 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 PLCD3Q8N3E9 789 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 MAP4K1Q92918 833 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 PGBD1Q96JS3 809 aa19.54■□□□□ 0.72
VIM-204ENST00000478746 ZBTB42B2RXF5 422 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 CXCL14O95715 111 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 GSPT1P15170 499 aaKnown RBP19.53■□□□□ 0.72
VIM-204ENST00000478746 MCM5P33992 734 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 ZNF76P36508 570 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 ATAT1Q5SQI0 421 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 RARS2Q5T160 578 aaKnown RBP19.53■□□□□ 0.72
VIM-204ENST00000478746 TTC22Q5TAA0 569 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 MIS18BP1Q6P0N0 1132 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 ECHDC2Q86YB7 292 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 RAB11FIP4Q86YS3 637 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 C12orf76Q8N812 135 aaPredicted RBP19.53■□□□□ 0.72
VIM-204ENST00000478746 TDRD5Q8NAT2 981 aaKnown RBP19.53■□□□□ 0.72
VIM-204ENST00000478746 FANCBQ8NB91 859 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 TMEM87AQ8NBN3 555 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 TMEM87BQ96K49 555 aa19.53■□□□□ 0.72
VIM-204ENST00000478746 DBR1Q9UK59 544 aaKnown RBP19.53■□□□□ 0.72
VIM-204ENST00000478746 SH2B2O14492 632 aaPredicted RBP19.52■□□□□ 0.72
VIM-204ENST00000478746 C22orf31O95567 290 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 ATP4AP20648 1035 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 LIFRP42702 1097 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 TMTC3Q6ZXV5 915 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 TRMT1LQ7Z2T5 733 aaKnown RBP19.52■□□□□ 0.72
VIM-204ENST00000478746 SLC39A11Q8N1S5 342 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 RNF169Q8NCN4 708 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 FLCNQ8NFG4 579 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 ANO3Q9BYT9 981 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 RIC8AQ9NPQ8 531 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 SLC12A7Q9Y666 1083 aa19.52■□□□□ 0.72
VIM-204ENST00000478746 WDR87Q6ZQQ6 2873 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms