RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	WHAMMP3	Q1A5X7	153 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	VMAC	Q2NL98	169 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCDC144B	Q3MJ40	725 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	TRIM65	Q6PJ69	517 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CRELD2	Q6UXH1	353 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ARMC9	Q7Z3E5	817 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	TSPYL5	Q86VY4	417 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	MFN1	Q8IWA4	741 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCAR1	Q8IX12	1150 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	RBM12B	Q8IXT5	1001 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCDC144CP	Q8IYA2	1237 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZDHHC14	Q8IZN3	488 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	C1orf131	Q8NDD1	294 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	FAM76A	Q8TAV0	307 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANKRD24	Q8TF21	1146 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZFAND2B	Q8WV99	257 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	LEO1	Q8WVC0	666 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	LZIC	Q8WZA0	190 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	SMARCC1	Q92922	1105 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZKSCAN4	Q969J2	545 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	JAKMIP1	Q96N16	626 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	C8orf37	Q96NL8	207 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	JPH2	Q9BR39	696 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CRACR2A	Q9BSW2	395 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	BCL2L13	Q9BXK5	485 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	GPR62	Q9BZJ7	368 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZCCHC17	Q9NP64	241 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	TRMT1	Q9NXH9	659 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	BTG4	Q9NY30	223 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	GPR160	Q9UJ42	338 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	TNN	Q9UQP3	1299 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	MTMR6	Q9Y217	621 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	TARSL2	A2RTX5	802 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	SLC22A31	A6NKX4	558 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	USP27X	A6NNY8	438 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	NOTO	A8MTQ0	251 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520		H3BQF6	201 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	GFRA2	O00451	464 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	FES	P07332	822 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	ATP5J	P18859	108 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CLNS1A	P54105	237 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	EPHB3	P54753	998 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CHMP4BP1	P59074	171 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CASP8	Q14790	479 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	SNCB	Q16143	134 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CCDC57	Q2TAC2	916 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	HSP90AB2P	Q58FF8	381 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CEP85L	Q5SZL2	805 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	EMC10	Q5UCC4	262 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	ZNF772	Q68DY9	489 aa	Predicted RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CCDC70	Q6NSX1	233 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	UNC5CL	Q8IV45	518 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CCDC83	Q8IWF9	413 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	MRPL41	Q8IXM3	137 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	SYT8	Q8NBV8	401 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	RUFY2	Q8WXA3	655 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CCDC47	Q96A33	483 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	LTV1	Q96GA3	475 aa	Predicted RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CCDC34	Q96HJ3	373 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	SPATA32	Q96LK8	384 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	TTC14	Q96N46	770 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	SETDB2	Q96T68	719 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	NAA15	Q9BXJ9	866 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	TRIT1	Q9H3H1	467 aa	Known RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	PDE11A	Q9HCR9	933 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	INCENP	Q9NQS7	918 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	KLC4	Q9NSK0	619 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	DACT1	Q9NYF0	836 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	STAP2	Q9UGK3	403 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	MBD1	Q9UIS9	605 aa	Predicted RBP	5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	CDC23	Q9UJX2	597 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	ITGB1BP2	Q9UKP3	347 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	NWD2	Q9ULI1	1742 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	FAN1	Q9Y2M0	1017 aa		5.27	□□□□□ -1.57
PTCD3-212	ENST00000477520	WDR17	Q8IZU2	1322 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	GOLGA6L10	A0A0M3HER8	536 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	ERICH2	A1L162	156 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	NPHP1	O15259	732 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	CUTA	O60888	179 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	SEC31A	O94979	1220 aa	Known RBP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	RTN3	O95197	1032 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	FER	P16591	822 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	SCP2	P22307	547 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	PSMA5	P28066	241 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	GCK	P35557	465 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	ETV3	P41162	512 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	FNTA	P49354	379 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	LIG3	P49916	1009 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	AFF3	P51826	1226 aa	Known RBP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	PDE1A	P54750	535 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	EIF4A2	Q14240	407 aa	Known RBP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	NAIF1	Q69YI7	327 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	IQCE	Q6IPM2	695 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	KCNV1	Q6PIU1	500 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	CCDC73	Q6ZRK6	1079 aa		5.26	□□□□□ -1.57
PTCD3-212	ENST00000477520	TSHZ1	Q6ZSZ6	1077 aa		5.26	□□□□□ -1.57

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