RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PXMP2Q9NR77 195 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 ANKFY1Q9P2R3 1169 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 NUMBLQ9Y6R0 609 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 WDR19Q8NEZ3 1342 aa5.65□□□□□ -1.51
USP4-209ENST00000475873 IGSF9BQ9UPX0 1349 aa5.65□□□□□ -1.51
USP4-209ENST00000475873 MYO9AB2RTY4 2548 aa5.65□□□□□ -1.51
USP4-209ENST00000475873 URB1O60287 2271 aaKnown RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 NT5C1B-RDH14C9J2C7 533 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 HYAL3O43820 417 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 CXCL14O95715 111 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 TSPY3P0CV98 308 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 TSPY8P0CW00 308 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 NOVA1P51513 510 aaKnown RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 TROAPQ12815 778 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 UBE3CQ15386 1083 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 MLF2Q15773 248 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 AASDHQ4L235 1098 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 KIAA1211LQ6NV74 962 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 TAF2Q6P1X5 1199 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 ZNF444Q8N0Y2 327 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 FAM160A2Q8N612 972 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 GLIS3Q8NEA6 775 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 TMEM40Q8WWA1 233 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 FGF14Q92915 247 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 ZNF707Q96C28 371 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 CRELD1Q96HD1 420 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 ZNF558Q96NG5 402 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 IWS1Q96ST2 819 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 MPHOSPH6Q99547 160 aaKnown RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 FTHL17Q9BXU8 183 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 FAM126AQ9BYI3 521 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 OSBPL6Q9BZF3 934 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 FAM49AQ9H0Q0 323 aaPredicted RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 C1orf115Q9H7X2 142 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 CDHR5Q9HBB8 845 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 WDR6Q9NNW5 1121 aaKnown RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 IL1RAPL2Q9NP60 686 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 SPG21Q9NZD8 308 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 PUF60Q9UHX1 559 aaKnown RBP5.64□□□□□ -1.51
USP4-209ENST00000475873 KLK13Q9UKR3 277 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 RAB23Q9ULC3 237 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 LRFN2Q9ULH4 789 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 STX8Q9UNK0 236 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.64□□□□□ -1.51
USP4-209ENST00000475873 PCDHB7Q9Y5E2 793 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 IRAK3Q9Y616 596 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 CLUHO75153 1309 aa5.64□□□□□ -1.51
USP4-209ENST00000475873 DOPEY1Q5JWR5 2465 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 RFPL2O75678 378 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 MYBP10242 640 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 GNAT1P11488 350 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 LAMP2P13473 410 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 RPS9P46781 194 aaKnown RBP5.63□□□□□ -1.51
USP4-209ENST00000475873 CLCN4P51793 760 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 FAM189BP81408 668 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 PAK2Q13177 524 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 SIM2Q14190 667 aaPredicted RBP5.63□□□□□ -1.51
USP4-209ENST00000475873 GAS6Q14393 721 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 GRIK4Q16099 956 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 SLC44A4Q53GD3 710 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 CLLU1OSQ5K130 101 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 TCEAL6Q6IPX3 200 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 PARM1Q6UWI2 310 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 C15orf39Q6ZRI6 1047 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 VPS52Q8N1B4 723 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 DCAF4Q8WV16 495 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 GLG1Q92896 1179 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 TCEAL3Q969E4 200 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 OSBP2Q969R2 916 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 NXPE3Q969Y0 559 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 ADAM2Q99965 735 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 PDCD2LQ9BRP1 358 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 USP26Q9BXU7 913 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 API5Q9BZZ5 524 aaKnown RBP5.63□□□□□ -1.51
USP4-209ENST00000475873 FAM217BQ9NTX9 383 aaPredicted RBP5.63□□□□□ -1.51
USP4-209ENST00000475873 PAG1Q9NWQ8 432 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 C2orf42Q9NWW7 574 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 TUBE1Q9UJT0 475 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 SQORQ9Y6N5 450 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 ABCA12Q86UK0 2595 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 NOTCH4Q99466 2003 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 PTPRQQ9UMZ3 2332 aa5.63□□□□□ -1.51
USP4-209ENST00000475873 SHROOM3Q8TF72 1996 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 NOTCH2Q04721 2471 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CHURC1-FNTBB4DL54 471 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 B4DLN1 442 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 FOXP2O15409 715 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 B4GALT3O60512 393 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 LILRB3O75022 631 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 PAPLNO95428 1278 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CNPP09543 421 aaKnown RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 ZNF806P0C7X5 589 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CTSAP10619 480 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 PDHBP11177 359 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 MYCLP12524 364 aaPredicted RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 CA8P35219 290 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 PPM1AP35813 382 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 MAGEA9P43362 315 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 FNTBP49356 437 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms