RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 METTL13Q8N6R0 699 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 IQUBQ8NA54 791 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 CAGE1Q8TC20 777 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 DHX38Q92620 1227 aaKnown RBP11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 CALML4Q96GE6 196 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 SCLYQ96I15 445 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 SH2D3AQ9BRG2 576 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 UBE2OQ9C0C9 1292 aaKnown RBP11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 TNMDQ9H2S6 317 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 ZSWIM4Q9H7M6 989 aa11.78□□□□□ -0.52
SMARCD3-208ENST00000472789 NR1I2O75469 434 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CKBP12277 381 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CSF2RAP15509 400 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 SELPP16109 830 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 LIG1P18858 919 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 HOXC8P31273 242 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 NDUFA8P51970 172 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 TBC1D8BQ0IIM8 1120 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 PPIGQ13427 754 aaKnown RBP eCLIP11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 MARCH8Q5T0T0 291 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 HAUS3Q68CZ6 603 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 PLA2G4FQ68DD2 849 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 MFSD5Q6N075 450 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 TAF2Q6P1X5 1199 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 LRRC8DQ7L1W4 858 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 OTUD6AQ7L8S5 288 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 DEFB128Q7Z7B8 93 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 ELOA2Q8IYF1 753 aaPredicted RBP11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 FMR1NBQ8N0W7 255 aaPredicted RBP11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 KCTD17Q8N5Z5 321 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 IGSF22Q8N9C0 903 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CNNM3Q8NE01 707 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 NEK9Q8TD19 979 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 SNX29Q8TEQ0 813 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 DNAJB3Q8WWF6 145 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 SYMPKQ92797 1274 aaKnown RBP11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 WNT8BQ93098 351 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CDK5RAP3Q96JB5 506 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CEP170P1Q96L14 293 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CTAGE1Q96RT6 745 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CCSER1Q9C0I3 900 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 WNT8AQ9H1J5 351 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 CUEDC2Q9H467 287 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 SUGCTQ9HAC7 445 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 HPSEQ9Y251 543 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 COL1A2P08123 1366 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 TTC28Q96AY4 2481 aa11.77□□□□□ -0.53
SMARCD3-208ENST00000472789 A0A087WWV3 80 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 PP2D1A8MPX8 630 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 RSPH10B2B2RC85 870 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 M0QZ92 97 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 PITPNM1O00562 1244 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 POLR2DO15514 142 aaKnown RBP11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 MED24O75448 989 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 SLITRK3O94933 977 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 RSPH10BP0C881 870 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 ACRP10323 421 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 CDC25AP30304 524 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 YWHABP31946 246 aaKnown RBP11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 NPEPPSP55786 919 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 ADAM17P78536 824 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 TMEM62Q0P6H9 643 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 IL17AQ16552 155 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 XKR9Q5GH70 373 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 ZNF618Q5T7W0 954 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 C4orf19Q8IY42 314 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 ENGASEQ8NFI3 743 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 PPP1R16BQ96T49 567 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 COL25A1Q9BXS0 654 aaPredicted RBP11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 NT5C3AQ9H0P0 336 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 GZF1Q9H116 711 aaPredicted RBP11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 CLSTN2Q9H4D0 955 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 MAGEF1Q9HAY2 307 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 TUFT1Q9NNX1 390 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 BMP2KQ9NSY1 1161 aaPredicted RBP11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 WRAP73Q9P2S5 460 aaPredicted RBP11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 GINS2Q9Y248 185 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 PCDHA2Q9Y5H9 948 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 KDM3AQ9Y4C1 1321 aa11.76□□□□□ -0.53
SMARCD3-208ENST00000472789 MBLAC1A4D2B0 266 aaPredicted RBP11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 ZBTB42B2RXF5 422 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 ZBTB39O15060 712 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 MAGEB2O15479 319 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 C22orf31O95567 290 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 IQCF3P0C7M6 154 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 TMOD1P28289 359 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 CLCN3P51790 818 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 AMPD3Q01432 767 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 SNW1Q13573 536 aaKnown RBP11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 TRIM71Q2Q1W2 868 aaKnown RBP11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 ZSCAN23Q3MJ62 389 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 SPECC1Q5M775 1068 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 RRAGBQ5VZM2 374 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 EFCAB12Q6NXP0 572 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 POTEGQ6S5H5 508 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 ANO5Q75V66 913 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 CABP7Q86V35 215 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 CATSPER3Q86XQ3 398 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 LRRC71Q8N4P6 559 aa11.75□□□□□ -0.53
SMARCD3-208ENST00000472789 PIGOQ8TEQ8 1089 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms