RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 RRP36Q96EU6 259 aaKnown RBP7.87□□□□□ -1.15
HDAC1-204ENST00000471488 TMEM169Q96HH4 297 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 SDF4Q9BRK5 362 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 GBP3Q9H0R5 595 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 CNNM2Q9H8M5 875 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 RGS18Q9NS28 235 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 TMEM161AQ9NX61 479 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 SLC9A2Q9UBY0 812 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 LZTS1Q9Y250 596 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 PCDHA2Q9Y5H9 948 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 LOXHD1Q8IVV2 1947 aa7.87□□□□□ -1.15
HDAC1-204ENST00000471488 SMIM35A0A1B0GVV1 85 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 hCG_1642624A0A1W2PR95 340 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 CYTH3O43739 400 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 NPR3P17342 541 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 ITGB5P18084 799 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 SDSP20132 328 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 KLRC2P26717 231 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 KIF5BP33176 963 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 ALDH7A1P49419 539 aaKnown RBP7.86□□□□□ -1.15
HDAC1-204ENST00000471488 PLCB3Q01970 1234 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 KCNC3Q14003 757 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 GRM4Q14833 912 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 WTAPQ15007 396 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 ST3GAL2Q16842 350 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 SLC35G1Q2M3R5 365 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 B4GALNT3Q6L9W6 998 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 KIAA1841Q6NSI8 718 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 LRRC55Q6ZSA7 311 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 OTOP3Q7RTS5 596 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 CATIPQ7Z7H3 387 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 RALYLQ86SE5 291 aaKnown RBP7.86□□□□□ -1.15
HDAC1-204ENST00000471488 ZDHHC14Q8IZN3 488 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 VPS52Q8N1B4 723 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 NME8Q8N427 588 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 CCDC82Q8N4S0 544 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 MRPL43Q8N983 215 aaKnown RBP7.86□□□□□ -1.15
HDAC1-204ENST00000471488 RASGRP4Q8TDF6 673 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 TMEM40Q8WWA1 233 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 GPRASP2Q96D09 838 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 MTMR8Q96EF0 704 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 TMEM117Q9H0C3 514 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 KCNK12Q9HB15 430 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 DZANK1Q9NVP4 752 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 TCEAL9Q9UHQ7 104 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 AKT3Q9Y243 479 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 INPP5FQ9Y2H2 1132 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 PCDHB15Q9Y5E8 787 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 SQORQ9Y6N5 450 aa7.86□□□□□ -1.15
HDAC1-204ENST00000471488 FNDC1Q4ZHG4 1894 aaPredicted RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 WDR87Q6ZQQ6 2873 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 C9IYK1 514 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 C2CD2LO14523 706 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 HOXA2O43364 376 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 KINO60870 393 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 FGFR4P22455 802 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 BCAR1P56945 870 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 ACTR2P61160 394 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 RNASELQ05823 741 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 SART3Q15020 963 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 NFXL1Q6ZNB6 911 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 FAM228AQ86W67 206 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 CMTR1Q8N1G2 835 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 CTCFLQ8NI51 663 aaPredicted RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 CASD1Q96PB1 797 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 PCYT2Q99447 389 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 MYL10Q9BUA6 226 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 LNPKQ9C0E8 428 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 SEMA4AQ9H3S1 761 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 RIOX1Q9H6W3 641 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 PSTPIP2Q9H939 334 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 TBC1D17Q9HA65 648 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 SENP2Q9HC62 589 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 RALYQ9UKM9 306 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 CDV3Q9UKY7 258 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 USP18Q9UMW8 372 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 DUSP12Q9UNI6 340 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 BAZ2BQ9UIF8 2168 aaKnown RBP7.85□□□□□ -1.15
HDAC1-204ENST00000471488 DMXL1Q9Y485 3027 aa7.85□□□□□ -1.15
HDAC1-204ENST00000471488 FRMPD4Q14CM0 1322 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 DCDC2BA2VCK2 349 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 MEIS2O14770 477 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 ZNF76P36508 570 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 CLCN3P51790 818 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 NONOQ15233 471 aaKnown RBP eCLIP7.84□□□□□ -1.15
HDAC1-204ENST00000471488 SEC23AQ15436 765 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 FAM160B1Q5W0V3 765 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 PDXDC2PQ6P474 469 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 RAB11FIP4Q86YS3 637 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 KIAA0319LQ8IZA0 1049 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 SLC39A11Q8N1S5 342 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 PGBD1Q96JS3 809 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 SFXN1Q9H9B4 322 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 PCDHA6Q9UN73 950 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 USTQ9Y2C2 406 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 SIT1Q9Y3P8 196 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 PCDHA8Q9Y5H6 950 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 CACNA1BQ00975 2339 aa7.84□□□□□ -1.15
HDAC1-204ENST00000471488 SALL3Q9BXA9 1300 aa7.83□□□□□ -1.16
HDAC1-204ENST00000471488 KDM3AQ9Y4C1 1321 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms