RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, human

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRN1-208	ENST00000470537	HOXB8	P17481	243 aa	Predicted RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	AVPR2	P30518	371 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	TCF7	P36402	384 aa	Predicted RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	MRPS6	P82932	125 aa	Known RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	MRPS9	P82933	396 aa	Known RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	GUCA2A	Q02747	115 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	HDAC1	Q13547	482 aa	Predicted RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	AAMP	Q13685	434 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	BMS1	Q14692	1282 aa	Known RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	GRIK4	Q16099	956 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	SPOUT1	Q5T280	376 aa	Known RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	CATIP	Q7Z7H3	387 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	DNAJB3	Q8WWF6	145 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	GPRASP2	Q96D09	838 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	RPGRIP1	Q96KN7	1286 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	PIGS	Q96S52	555 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	AZI2	Q9H6S1	392 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	CLEC1B	Q9P126	229 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	SEC63	Q9UGP8	760 aa	Known RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	NR2E1	Q9Y466	385 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	USP15	Q9Y4E8	981 aa	Predicted RBP	10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	PCDHB7	Q9Y5E2	793 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	CDY2A	Q9Y6F7	541 aa		10.15	□□□□□ -0.78
XRN1-208	ENST00000470537	TECTA	O75443	2155 aa		10.15	□□□□□ -0.79
XRN1-208	ENST00000470537	FRMPD4	Q14CM0	1322 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	PIK3CD	O00329	1044 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	PPP1R11	O60927	126 aa	Predicted RBP	10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	SCG2	P13521	617 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	JUND	P17535	347 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	KIF5B	P33176	963 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	SP4	Q02446	784 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	MGAT3	Q09327	533 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	TCF15	Q12870	199 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	PAK2	Q13177	524 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	CAMK1	Q14012	370 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	GRM4	Q14833	912 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	RBM23	Q86U06	439 aa	Known RBP	10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	TRIM50	Q86XT4	487 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	UBALD2	Q8IYN6	164 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	RRP36	Q96EU6	259 aa	Known RBP	10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	TLR9	Q9NR96	1032 aa		10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	MRPL42	Q9Y6G3	142 aa	Known RBP	10.14	□□□□□ -0.79
XRN1-208	ENST00000470537	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	IFIT3	O14879	490 aa	Known RBP	10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	PPFIA3	O75145	1194 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	CSPG5	O95196	566 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	SMARCA1	P28370	1054 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	CD52	P31358	61 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	GNAQ	P50148	359 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	SLC26A2	P50443	739 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	SEC23A	Q15436	765 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	PTPN21	Q16825	1174 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	CES5A	Q6NT32	575 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	TMEM184A	Q6ZMB5	413 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	RALYL	Q86SE5	291 aa	Known RBP	10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	RIPOR3	Q96MK2	946 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	MAP3K14	Q99558	947 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	LZTS2	Q9BRK4	669 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	OSBPL7	Q9BZF2	842 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	NGRN	Q9NPE2	291 aa	Known RBP	10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	C1orf112	Q9NSG2	853 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	PADI3	Q9ULW8	664 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	BARX2	Q9UMQ3	279 aa	Predicted RBP	10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	TRPV2	Q9Y5S1	764 aa		10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	PTPRZ1	P23471	2315 aa	Predicted RBP	10.13	□□□□□ -0.79
XRN1-208	ENST00000470537	ZDBF2	Q9HCK1	2354 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	IGSF9B	Q9UPX0	1349 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	DENND3	A2RUS2	1198 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	PROB1	E7EW31	1015 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	GPR182	O15218	404 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	MARK3	P27448	753 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	SARS	P49591	514 aa	Known RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	KRT76	Q01546	638 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	KRT17	Q04695	432 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	MTMR1	Q13613	665 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	WTAP	Q15007	396 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	TPRN	Q4KMQ1	711 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	PAN2	Q504Q3	1202 aa	Known RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	LCE2C	Q5TA81	110 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	RUFY4	Q6ZNE9	571 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	SLC24A5	Q71RS6	500 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	ERMP1	Q7Z2K6	904 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	TEX2	Q8IWB9	1127 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	THNSL1	Q8IYQ7	743 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	CTCFL	Q8NI51	663 aa	Predicted RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	RASGRP4	Q8TDF6	673 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	ATP8B4	Q8TF62	1192 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	SUSD6	Q92537	303 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	NECTIN4	Q96NY8	510 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	CELF4	Q9BZC1	486 aa	Known RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	LNPK	Q9C0E8	428 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	FAM49A	Q9H0Q0	323 aa	Predicted RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	RWDD1	Q9H446	243 aa	Predicted RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	OSBPL3	Q9H4L5	887 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	BCAS3	Q9H6U6	928 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	AGO3	Q9H9G7	860 aa	Known RBP	10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	LZTS1	Q9Y250	596 aa		10.12	□□□□□ -0.79
XRN1-208	ENST00000470537	PCDHA2	Q9Y5H9	948 aa		10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms