RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 AENQ8WTP8 325 aaKnown RBP11.59□□□□□ -0.55
CHD3-208ENST00000470531 TAF1DQ9H5J8 278 aaPredicted RBP11.59□□□□□ -0.55
CHD3-208ENST00000470531 VPS37BQ9H9H4 285 aa11.59□□□□□ -0.55
CHD3-208ENST00000470531 CEP72Q9P209 647 aa11.59□□□□□ -0.55
CHD3-208ENST00000470531 MTUS1Q9ULD2 1270 aa11.59□□□□□ -0.55
CHD3-208ENST00000470531 GINS2Q9Y248 185 aa11.59□□□□□ -0.55
CHD3-208ENST00000470531 TOM1O60784 492 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 SERPINB2P05120 415 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ARHGAP4P98171 946 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 MYO1EQ12965 1108 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 SLC18A3Q16572 532 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ECM1Q16610 540 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 LONRF1Q17RB8 773 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ALS2CLQ60I27 953 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 CCDC63Q8NA47 563 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 PRM3Q9NNZ6 103 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 FLT1P17948 1338 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 GMNCA6NCL1 334 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 TISP43B9A030 160 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 THAP12O43422 761 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 TNNI1P19237 187 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 FLT3P36888 993 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 MIIPQ5JXC2 388 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 SUGP1Q8IWZ8 645 aaKnown RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 SRRM1Q8IYB3 904 aaKnown RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 ANKS1AQ92625 1134 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ZNF653Q96CK0 615 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 DYDC2Q96IM9 177 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 RIC8AQ9NPQ8 531 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 STK17AQ9UEE5 414 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 TSKSQ9UJT2 592 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 MST1RQ04912 1400 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 TMEM150BA6NC51 233 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 DCDC2CA8MYV0 355 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 MEFVO15553 781 aaPredicted RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 MED24O75448 989 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 MDH1P40925 334 aaKnown RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 PPP1R2P41236 205 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 MFSD4BQ5TF39 518 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ZNF571Q7Z3V5 609 aaPredicted RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 FMNL3Q8IVF7 1028 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.58□□□□□ -0.563e-20■■■□□ 17.1
CHD3-208ENST00000470531 UBL4BQ8N7F7 174 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 ARHGEF2Q92974 986 aaKnown RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 TEKT1Q969V4 418 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 PRMT1Q99873 361 aaKnown RBP11.58□□□□□ -0.56
CHD3-208ENST00000470531 BLOC1S4Q9NUP1 217 aa11.58□□□□□ -0.56
CHD3-208ENST00000470531 FTLP02792 175 aaPredicted RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 POLD1P28340 1107 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 MYL7Q01449 175 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 SNCBQ16143 134 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 DAB2IPQ5VWQ8 1189 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 FBXO33Q7Z6M2 555 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 ZNF512BQ96KM6 892 aaPredicted RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 PNMA5Q96PV4 448 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 ZMYND12Q9H0C1 365 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 CUEDC2Q9H467 287 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 NKIRAS1Q9NYS0 192 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 MYO5AQ9Y4I1 1855 aaKnown RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 PNMA6FA0A0J9YX94 578 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 TARSL2A2RTX5 802 aaKnown RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 LAD1O00515 517 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 SHOX2O60902 331 aaPredicted RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 PCK1P35558 622 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 SLC35G2Q8TBE7 412 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 ZNF507Q8TCN5 953 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 C7orf25Q9BPX7 421 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 SYNCQ9H7C4 482 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 JMJD4Q9H9V9 463 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 G3BP2Q9UN86 482 aaKnown RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 ZNF233A6NK53 670 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 SPAG7O75391 227 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 RAD17O75943 681 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 UPP2O95045 317 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 CPP00450 1065 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 ERVK-9P63128 1117 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 MXRA7P84157 204 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 STXBP4Q6ZWJ1 553 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 INTS8Q75QN2 995 aaKnown RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 HOOK3Q86VS8 718 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 ELOA2Q8IYF1 753 aaPredicted RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 CCDC197Q8NCU1 140 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 RBM17Q96I25 401 aaKnown RBP11.57□□□□□ -0.56
CHD3-208ENST00000470531 CSRNP1Q96S65 589 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 PPP1R16BQ96T49 567 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 KIFC3Q9BVG8 833 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 KCNQ5Q9NR82 932 aa11.57□□□□□ -0.56
CHD3-208ENST00000470531 OPLAHO14841 1288 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 TMED2Q15363 201 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 KNOP1Q1ED39 458 aaKnown RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 GALNT17Q6IS24 598 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 MSL3Q8N5Y2 521 aaKnown RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 ATG4AQ8WYN0 398 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 ACSF2Q96CM8 615 aaPredicted RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 KLHL29Q96CT2 875 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 HVCN1Q96D96 273 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 C9orf72Q96LT7 481 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 RAB17Q9H0T7 212 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 MTMR4Q9NYA4 1195 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 GRID2IPA4D2P6 1211 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms