RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 CCSER2Q9H7U1 834 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PARVBQ9HBI1 364 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ATAD3AQ9NVI7 634 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 WDR35Q9P2L0 1181 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 MTRF1LQ9UGC7 380 aaKnown RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ZMYND8Q9ULU4 1186 aaPredicted RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PCDHB4Q9Y5E5 795 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 SNX8Q9Y5X2 465 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ERICH3Q5RHP9 1530 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 NPATQ14207 1427 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ZNF536O15090 1300 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 MAP3K19Q56UN5 1328 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 TRIM43BA6NCK2 446 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 OR5K4A6NMS3 321 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RSPH10B2B2RC85 870 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 C9IYK1 514 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 K7ENM7 598 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 HOXC11O43248 304 aaPredicted RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 EXTL3O43909 919 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 MAN1A2O60476 641 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 CBFA2T3O75081 653 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 TSC22D2O75157 780 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 TNFRSF21O75509 655 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 SNX4O95219 450 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 POP4O95707 220 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 F11P03951 625 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RHOXF2BP0C7M4 288 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RSPH10BP0C881 870 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 CTNNA1P35221 906 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 PSMC2P35998 433 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RXRGP48443 463 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 MAN2A2P49641 1150 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 PDE6CP51160 858 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RRP1P56182 461 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 MRPS15P82914 257 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 DAB2P98082 770 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 EXOSC10Q01780 885 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 GRSF1Q12849 480 aaKnown RBP eCLIP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 NFIAQ12857 509 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 GNA13Q14344 377 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 NDUFA5Q16718 116 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ANKDD1AQ495B1 522 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 TTC39AQ5SRH9 613 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 CEP85LQ5SZL2 805 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RNASEH2BQ5TBB1 312 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 USPL1Q5W0Q7 1092 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ALG1LQ6GMV1 187 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 KDELC1Q6UW63 502 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 IKBIPQ70UQ0 350 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 SESTD1Q86VW0 696 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 PGBD3Q8N328 593 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 TMEM57Q8N5G2 664 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ANKRD42Q8N9B4 389 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 NSUN7Q8NE18 718 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 IFT81Q8WYA0 676 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 SGK3Q96BR1 496 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 OPTNQ96CV9 577 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 CDCA5Q96FF9 252 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 CNDP1Q96KN2 507 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 CATSPER2Q96P56 530 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 PRPF18Q99633 342 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 C7orf25Q9BPX7 421 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 RHOXF2Q9BQY4 288 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 APOL5Q9BWW9 433 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 FAM129AQ9BZQ8 928 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 SLC13A1Q9BZW2 595 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 PSTPIP2Q9H939 334 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 MRS2Q9HD23 443 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ZCCHC17Q9NP64 241 aaKnown RBP5.58□□□□□ -1.52
COL3A1-205ENST00000470167 BRD7Q9NPI1 651 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ATP13A2Q9NQ11 1180 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 HOMER2Q9NSB8 354 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 DACH1Q9UI36 760 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ZNF112Q9UJU3 913 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ANGPTL3Q9Y5C1 460 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 ATP6V1DQ9Y5K8 247 aa5.58□□□□□ -1.52
COL3A1-205ENST00000470167 EIF3AQ14152 1382 aaKnown RBP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 MTUS2Q5JR59 1369 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 DHX57Q6P158 1386 aaKnown RBP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 KLRG2A4D1S0 409 aaPredicted RBP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 OR6C65A6NJZ3 312 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 LRRIQ3A6PVS8 624 aaPredicted RBP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 KIF28PB7ZC32 967 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 PSMD14O00487 310 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 TLR3O15455 904 aaKnown RBP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 ZW10O43264 779 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 MGRN1O60291 552 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 PIP5K1CO60331 668 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 CPNE3O75131 537 aaKnown RBP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 ZC3H11AO75152 810 aaKnown RBP eCLIP5.57□□□□□ -1.52
COL3A1-205ENST00000470167 CDC45O75419 566 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 KATNA1O75449 491 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 SLITRK3O94933 977 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 EPN2O95208 641 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 OR5F1O95221 314 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 NPTXRO95502 500 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 AGR2O95994 175 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 KRT14P02533 472 aa5.57□□□□□ -1.52
COL3A1-205ENST00000470167 THBS1P07996 1170 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms