RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 LOXHD1Q8IVV2 1947 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 EPG5Q9HCE0 2579 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 FRYLO94915 3013 aa13.52□□□□□ -0.25
SQSTM1-206ENST00000466342 H3BRB1 525 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 NOP56O00567 594 aaKnown RBP13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 MAFGO15525 162 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 HMGN5P82970 282 aaKnown RBP13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 GALNT17Q6IS24 598 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 CYFIP1Q7L576 1253 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 REXO1Q8N1G1 1221 aaKnown RBP13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 DAGLBQ8NCG7 672 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 GPRASP2Q96D09 838 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 CDHR1Q96JP9 859 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 PHF20Q9BVI0 1012 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 ANO3Q9BYT9 981 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 TUT1Q9H6E5 874 aaKnown RBP13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 EHMT1Q9H9B1 1298 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 TMEM260Q9NX78 707 aa13.51□□□□□ -0.25
SQSTM1-206ENST00000466342 EP300Q09472 2414 aaPredicted RBP13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 FSD2A1L4K1 749 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 ADAMTS3O15072 1205 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 SORBS3O60504 671 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 BRD1O95696 1058 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 SMIM10L2AP0DMW4 78 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 SMIM10L2BP0DMW5 78 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 SEMA3FQ13275 785 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 MTMR3Q13615 1198 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 NPY5RQ15761 445 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 SNX21Q969T3 373 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 S1PR5Q9H228 398 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 BCAS3Q9H6U6 928 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 PCDHA4Q9UN74 947 aa13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 MRPL42Q9Y6G3 142 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-206ENST00000466342 PER2O15055 1255 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 LGALS2P05162 132 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 GNAT1P11488 350 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 RBM10P98175 930 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 JAKMIP3Q5VZ66 844 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 TMEM184AQ6ZMB5 413 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 CMTR2Q8IYT2 770 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 BLIDQ8IZY5 108 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 MICAL1Q8TDZ2 1067 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 PGBD1Q96JS3 809 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 CDCA3Q99618 268 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 GPR20Q99678 358 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 SEMA4AQ9H3S1 761 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 MFSD1Q9H3U5 465 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 GJB4Q9NTQ9 266 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 KCNJ14Q9UNX9 436 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 NR2E1Q9Y466 385 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 UBIAD1Q9Y5Z9 338 aa13.49□□□□□ -0.25
SQSTM1-206ENST00000466342 TPRP12270 2363 aaKnown RBP13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 K7ELQ4 463 aaPredicted RBP13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 M0R2N6 131 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 CHRNA1P02708 482 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 ITGB5P18084 799 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 SREBF1P36956 1147 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 CUL4AQ13619 759 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 TRIM29Q14134 588 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 KIAA2013Q8IYS2 634 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 FAM184AQ8NB25 1140 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 VN1R2Q8NFZ6 395 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 RASGRP4Q8TDF6 673 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 JADE2Q9NQC1 790 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 SETD4Q9NVD3 440 aa13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 FNDC1Q4ZHG4 1894 aaPredicted RBP13.48□□□□□ -0.25
SQSTM1-206ENST00000466342 ATP9AO75110 1047 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 LMNAP02545 664 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 GHRP10912 638 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 KCNA2P16389 499 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 SP100P23497 879 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 FOSBP53539 338 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 UBE3AQ05086 875 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 MTMR1Q13613 665 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 DUSP6Q16828 381 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 ANKRD54Q6NXT1 300 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 CRIPAKQ8N1N5 446 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 KCNG4Q8TDN1 519 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 SEPT1Q8WYJ6 367 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 C8orf76Q96K31 380 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 DLL3Q9NYJ7 618 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 ZNF215Q9UL58 517 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 KIF3AQ9Y496 699 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 CACNA1GO43497 2377 aa13.47□□□□□ -0.25
SQSTM1-206ENST00000466342 FANCMQ8IYD8 2048 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 SRGAP2BP0DMP2 458 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 GJB2P29033 226 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 KRT2P35908 639 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 ADAM17P78536 824 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 ARHGAP4P98171 946 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 KCNC3Q14003 757 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 LPIN1Q14693 890 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 ANGPT1Q15389 498 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 SYCE2Q6PIF2 218 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 HSCBQ8IWL3 235 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 CRYGNQ8WXF5 182 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 MXRA8Q9BRK3 442 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 BRMS1Q9HCU9 246 aa13.46□□□□□ -0.25
SQSTM1-206ENST00000466342 SMC3Q9UQE7 1217 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms