RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 STK3Q13188 491 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 DDX10Q13206 875 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 SERINC3Q13530 473 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 LAPTM5Q13571 262 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 WTAPQ15007 396 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 RAB3GAP1Q15042 981 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 LRRFIP1Q32MZ4 808 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 ZC3H12BQ5HYM0 836 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 KIAA1614Q5VZ46 1190 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 C16orf54Q6UWD8 224 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 MAATS1Q7Z4T9 603 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 SLCO6A1Q86UG4 719 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 REXO1Q8N1G1 1221 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 AFAP1Q8N556 730 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 ZNF713Q8N859 430 aaPredicted RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 NUP43Q8NFH3 380 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 SH3TC2Q8TF17 1288 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 APPBP2Q92624 585 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 ATP6V1E2Q96A05 226 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 CHMP4CQ96CF2 233 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 GBP4Q96PP9 640 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 AP1M1Q9BXS5 423 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 PRKRIP1Q9H875 184 aaPredicted RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 EPB41L4AQ9HCS5 686 aaPredicted RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 PDRG1Q9NUG6 133 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 EXOC1Q9NV70 894 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 MKS1Q9NXB0 559 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 TMOD4Q9NZQ9 345 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 KLHL14Q9P2G3 628 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 GTF3C4Q9UKN8 822 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 XIRP1Q702N8 1843 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 PIK3R4Q99570 1358 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 CPS1P31327 1500 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 A0A1W2PQ45 241 aaPredicted RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 A0A1W2PQY0 241 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 MEIS3P2A8K0S8 358 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 NUDT19A8MXV4 375 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 H0YHG0 523 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 TNFRSF10CO14798 259 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 FGRP09769 529 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 SLC5A1P13866 664 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 ATF7P17544 494 aaPredicted RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 UBA7P41226 1012 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 HALP42357 657 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 CTSKP43235 329 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 CDKN1CP49918 316 aaPredicted RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 UBASH3AP57075 661 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 CYP4F8P98187 520 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 MECOMQ03112 1051 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 VMACQ2NL98 169 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 CNKSR3Q6P9H4 555 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 CRTC3Q6UUV7 619 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 CCDC144CPQ8IYA2 1237 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 MYOCDQ8IZQ8 938 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 NKAIN3Q8N8D7 197 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 ENAHQ8N8S7 591 aaPredicted RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 UHMK1Q8TAS1 419 aaKnown RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 SH3KBP1Q96B97 665 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 FEZ1Q99689 392 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 HERPUD2Q9BSE4 406 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 XYLT2Q9H1B5 865 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 PNNQ9H307 717 aaKnown RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 AP5S1Q9NUS5 200 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 ZMAT5Q9UDW3 170 aaKnown RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 CTTNBP2Q8WZ74 1663 aa6.16□□□□□ -1.42
VPS41-209ENST00000457055 POLR1AO95602 1720 aaPredicted RBP6.16□□□□□ -1.42
VPS41-209ENST00000457055 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS41-209ENST00000457055 ZNF142P52746 1687 aaPredicted RBP6.15□□□□□ -1.42
VPS41-209ENST00000457055 CCDC196A0A1B0GTZ2 297 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 A6NCN8 305 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 OTOL1A6NHN0 477 aaPredicted RBP6.15□□□□□ -1.42
VPS41-209ENST00000457055 ARIH2O95376 493 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 VAV1P15498 845 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 ENPP1P22413 925 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 CCNCP24863 283 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 TPD52P55327 224 aaPredicted RBP6.15□□□□□ -1.42
VPS41-209ENST00000457055 TRDNQ13061 729 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 MRPL28Q13084 256 aaKnown RBP6.15□□□□□ -1.42
VPS41-209ENST00000457055 AUHQ13825 339 aaKnown RBP6.15□□□□□ -1.42
VPS41-209ENST00000457055 LDHDQ86WU2 507 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 IGDCC3Q8IVU1 814 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 TMEFF1Q8IYR6 380 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 TTC8Q8TAM2 541 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 FEZF2Q8TBJ5 459 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 AFAP1L1Q8TED9 768 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 USP6NLQ92738 828 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 SLX1AQ9BQ83 275 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 TNFRSF12AQ9NP84 129 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 IMPACTQ9P2X3 320 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 CLIP2Q9UDT6 1046 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 ACSL6Q9UKU0 697 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 CFAP45Q9UL16 551 aa6.15□□□□□ -1.42
VPS41-209ENST00000457055 VWDEQ8N2E2 1590 aa6.14□□□□□ -1.43
VPS41-209ENST00000457055 FAM86C2PA6NEL3 165 aa6.14□□□□□ -1.43
VPS41-209ENST00000457055 MTRF1O75570 445 aaKnown RBP6.14□□□□□ -1.43
VPS41-209ENST00000457055 RHOBTB3O94955 611 aa6.14□□□□□ -1.43
VPS41-209ENST00000457055 TNFAIP3P21580 790 aa6.14□□□□□ -1.43
VPS41-209ENST00000457055 CNGA1P29973 690 aa6.14□□□□□ -1.43
VPS41-209ENST00000457055 RBM5P52756 815 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS41-209ENST00000457055 BPIFB3P59826 476 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms