RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 PLA2G4FQ68DD2 849 aa12.9□□□□□ -0.34
SCN9A-204ENST00000452182 TRMT1LQ7Z2T5 733 aaKnown RBP12.9□□□□□ -0.34
SCN9A-204ENST00000452182 FMR1NBQ8N0W7 255 aaPredicted RBP12.9□□□□□ -0.34
SCN9A-204ENST00000452182 CCDC43Q96MW1 224 aaKnown RBP12.9□□□□□ -0.34
SCN9A-204ENST00000452182 JPH2Q9BR39 696 aaPredicted RBP12.9□□□□□ -0.34
SCN9A-204ENST00000452182 DHX33Q9H6R0 707 aaKnown RBP12.9□□□□□ -0.34
SCN9A-204ENST00000452182 SETD4Q9NVD3 440 aa12.9□□□□□ -0.34
SCN9A-204ENST00000452182 A0A087WWV3 80 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 IGKV6-21A0A0C4DH24 114 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 GAS2O43903 313 aaKnown RBP12.89□□□□□ -0.35
SCN9A-204ENST00000452182 MAFO75444 373 aaPredicted RBP12.89□□□□□ -0.35
SCN9A-204ENST00000452182 ZNF202O95125 648 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 C22orf31O95567 290 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 SLFN14P0C7P3 912 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 PLA2G4BP0C869 781 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 CHMP4BP1P59074 171 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 TBC1D8BQ0IIM8 1120 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 HIC1Q14526 733 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 FAM47CQ5HY64 1035 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 PADI6Q6TGC4 694 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 MTHFD1LQ6UB35 978 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 ANKRD33Q7Z3H0 272 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 SLC7A3Q8WY07 619 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 DHX58Q96C10 678 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 TIGD1Q96MW7 591 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 TOX2Q96NM4 488 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 TNMDQ9H2S6 317 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 PDLIM7Q9NR12 457 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 KBTBD4Q9NVX7 518 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 TUBE1Q9UJT0 475 aa12.89□□□□□ -0.35
SCN9A-204ENST00000452182 CCDC85CA6NKD9 419 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 ACTN4O43707 911 aaKnown RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 RPLP2P05387 115 aaKnown RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 KLRC1P26715 233 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 MCM6Q14566 821 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 GDF6Q6KF10 455 aaPredicted RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 RINT1Q6NUQ1 792 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 SV2BQ7L1I2 683 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 FAM126BQ8IXS8 530 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 RETREG2Q8NC44 543 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 TRAPPC12Q8WVT3 735 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 KIF12Q96FN5 646 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 TIPINQ9BVW5 301 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 LRRC27Q9C0I9 530 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 PCDHA2Q9Y5H9 948 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 TRIP12Q14669 1992 aaPredicted RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 MKI67P46013 3256 aaKnown RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 SMIM35A0A1B0GVV1 85 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 CD4P01730 458 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 LIG1P18858 919 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 CYP11B2P19099 503 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 GUCY2CP25092 1073 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 POLGP54098 1239 aaPredicted RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 IGBP1P78318 339 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 LONRF3Q496Y0 759 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 TAF2Q6P1X5 1199 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 KRBA2Q6ZNG9 492 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 C1orf186Q6ZWK4 172 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 RPAINQ86UA6 219 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 SERINC5Q86VE9 423 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 ELOA2Q8IYF1 753 aaPredicted RBP12.88□□□□□ -0.35
SCN9A-204ENST00000452182 CEP57L1Q8IYX8 460 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 LINC01465Q8N7H1 131 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 MCPH1Q8NEM0 835 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 CTAGE1Q96RT6 745 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 SH2D3AQ9BRG2 576 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 ATP6V0A4Q9HBG4 840 aa12.88□□□□□ -0.35
SCN9A-204ENST00000452182 TREHO43280 583 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 MAP3K13O43283 966 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 NR1I2O75469 434 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 MYL1P05976 194 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 PTMSP20962 102 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 TMOD1P28289 359 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 ATN1P54259 1190 aaPredicted RBP12.87□□□□□ -0.35
SCN9A-204ENST00000452182 SOX10P56693 466 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 AMPD3Q01432 767 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 PTK7Q13308 1070 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 EMC2Q15006 297 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 PTGISQ16647 500 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 TPRNQ4KMQ1 711 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 KANK3Q6NY19 840 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 CNNM4Q6P4Q7 775 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 PPP1R13LQ8WUF5 828 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 CCDC34Q96HJ3 373 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 XPNPEP1Q9NQW7 623 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 SERTAD1Q9UHV2 236 aa12.87□□□□□ -0.35
SCN9A-204ENST00000452182 EVPLQ92817 2033 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 TLR3O15455 904 aaKnown RBP12.86□□□□□ -0.35
SCN9A-204ENST00000452182 B4GALT4O60513 344 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 USO1O60763 962 aaKnown RBP12.86□□□□□ -0.35
SCN9A-204ENST00000452182 MBD3O95983 291 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 SSBP05455 408 aaKnown RBP eCLIP12.86□□□□□ -0.35
SCN9A-204ENST00000452182 DNM2P50570 870 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 ZNF200P98182 395 aaPredicted RBP12.86□□□□□ -0.35
SCN9A-204ENST00000452182 LRRC26Q2I0M4 334 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 ARSHQ5FYA8 562 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 EFCAB12Q6NXP0 572 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 SH3RF1Q7Z6J0 888 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 GPBP1Q86WP2 473 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 ZNF710Q8N1W2 664 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms