RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 DIS3Q9Y2L1 958 aaKnown RBP9.51□□□□□ -0.89
NIPBL-202ENST00000448238 MYO9BQ13459 2157 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 TSC22D2O75157 780 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 RASA1P20936 1047 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 TXKP42681 527 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 PLTPP55058 493 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 ADKP55263 362 aaKnown RBP9.51□□□□□ -0.89
NIPBL-202ENST00000448238 EHHADHQ08426 723 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 COX10Q12887 443 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 COG2Q14746 738 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 SDE2Q6IQ49 451 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 PMF1Q6P1K2 205 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 PARP9Q8IXQ6 854 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 CNPY3Q9BT09 278 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 ANGEL1Q9UNK9 670 aaKnown RBP9.51□□□□□ -0.89
NIPBL-202ENST00000448238 NNMTP40261 264 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 ZNF445P59923 1031 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 KLHL38Q2WGJ6 581 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 KIAA1755Q5JYT7 1200 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 PADI6Q6TGC4 694 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 ARMCX2Q7L311 632 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 PPM1KQ8N3J5 372 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 GLG1Q92896 1179 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 ALKBH8Q96BT7 664 aaKnown RBP9.51□□□□□ -0.89
NIPBL-202ENST00000448238 FAM192AQ9GZU8 254 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 BICC1Q9H694 974 aaKnown RBP9.51□□□□□ -0.89
NIPBL-202ENST00000448238 TUBGCP4Q9UGJ1 667 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 VAV3Q9UKW4 847 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 MYO1CO00159 1063 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 XPO1O14980 1071 aaKnown RBP9.51□□□□□ -0.89
NIPBL-202ENST00000448238 S100GP29377 79 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 CCDC157Q569K6 752 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 HAVCR1Q96D42 359 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 APOL4Q9BPW4 351 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 TRIM62Q9BVG3 475 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 CASS4Q9NQ75 786 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 ATAD3AQ9NVI7 634 aa9.51□□□□□ -0.89
NIPBL-202ENST00000448238 PRPSAP2O60256 369 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CBFA2T3O75081 653 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 ZBED1O96006 694 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 NDUFAF6Q330K2 333 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TRIQKQ629K1 86 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 FAM161BQ96MY7 647 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 SERHL2Q9H4I8 314 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CBX8Q9HC52 389 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 SERHLQ9NQF3 203 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CYP26B1Q9NR63 512 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CACNA2D2Q9NY47 1150 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CLCA2Q9UQC9 943 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TEX46H3BTG2 121 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 SDSP20132 328 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 SERPINB8P50452 374 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TRAP1Q12931 704 aaKnown RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CCDC36Q8IYA8 594 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CYGBQ8WWM9 190 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 AATFQ9NY61 560 aaKnown RBP eCLIP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 PPP2R2CQ9Y2T4 447 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 SH3GLB1Q9Y371 365 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 COL4A3BPQ9Y5P4 624 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 PHLPP2Q6ZVD8 1323 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 ARHGEF6Q15052 776 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 PKN2Q16513 984 aaKnown RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 EXOC3L4Q17RC7 722 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 RABGAP1LQ5R372 815 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 RASSF6Q6ZTQ3 369 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TRPM8Q7Z2W7 1104 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 ZBTB1Q9Y2K1 713 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 EIF3HO15372 352 aaKnown RBP eCLIP9.5□□□□□ -0.897e-6■□□□□ 9
NIPBL-202ENST00000448238 COBLO75128 1261 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 FLT3P36888 993 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 DNAL1Q4LDG9 190 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 PRAM1Q96QH2 718 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 LRRC4Q9HBW1 653 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 NINQ8N4C6 2090 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CCDC141Q6ZP82 1450 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 HFM1A2PYH4 1435 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 WDR91A4D1P6 747 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 AP3B1O00203 1094 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 PSMD12O00232 456 aaPredicted RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 ANXA11P50995 505 aaKnown RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 EIF2S3LQ2VIR3 472 aaKnown RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 CCDC60Q8IWA6 550 aaPredicted RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 WDR48Q8TAF3 677 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 IL1RAPL1Q9NZN1 696 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 RASA4BC9J798 803 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 RASA4O43374 803 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 HAUS5O94927 633 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 MYCLP12524 364 aaPredicted RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 ACADLP28330 430 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 VSNL1P62760 191 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 KIAA1841Q6NSI8 718 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 AP1S3Q96PC3 154 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TEKT3Q9BXF9 490 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 HADHAP40939 763 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 STAT5AP42229 794 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 GPR1P46091 355 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 STAT5BP51692 787 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 MRPS25P82663 173 aaKnown RBP9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TTC23Q5W5X9 447 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms