RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TPCN2Q8NHX9 752 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 CYP2W1Q8TAV3 490 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 BICD1Q96G01 975 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 ELAC2Q9BQ52 826 aaKnown RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 PARVGQ9HBI0 331 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 PNMA2Q9UL42 364 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 RPSAP08865 295 aaKnown RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 KDM7AQ6ZMT4 941 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 GSTA5Q7RTV2 222 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 FRMD5Q7Z6J6 570 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 EIF2AK1Q9BQI3 630 aaKnown RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 DDX4Q9NQI0 724 aaKnown RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 A0A1W2PRG0 241 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 NOL4O94818 638 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 NT5C2P49902 561 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 ZKSCAN8Q15776 578 aaPredicted RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 TMEM119Q4V9L6 283 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 HIBCHQ6NVY1 386 aaPredicted RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 CYFIP2Q96F07 1278 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 CCDC17Q96LX7 622 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 PSMD1Q99460 953 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 PLCD4Q9BRC7 762 aa12.87□□□□□ -0.35
MSH6-204ENST00000445503 NSRP1Q9H0G5 558 aaKnown RBP12.87□□□□□ -0.35
MSH6-204ENST00000445503 MYH7P12883 1935 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 MYH6P13533 1939 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 TJP1Q07157 1748 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 GH2P01242 217 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 GCLMP48507 274 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 ITIH3Q06033 890 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 SEPT7Q16181 437 aaKnown RBP12.86□□□□□ -0.35
MSH6-204ENST00000445503 NEK9Q8TD19 979 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 SYN2Q92777 582 aaPredicted RBP12.86□□□□□ -0.35
MSH6-204ENST00000445503 RUSC1Q9BVN2 902 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 EHMT1Q9H9B1 1298 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 GDF3Q9NR23 364 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 SYDE2Q5VT97 1194 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 RUBCNQ92622 972 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 AZI2Q9H6S1 392 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 CD248Q9HCU0 757 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 USTQ9Y2C2 406 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 STK38LQ9Y2H1 464 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 ACSL3O95573 720 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 BMP3P12645 472 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 GIT2Q14161 759 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 LRRC14Q15048 493 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 CAPN12Q6ZSI9 719 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 CCDC197Q8NCU1 140 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 ABCB11O95342 1321 aa12.86□□□□□ -0.35
MSH6-204ENST00000445503 TCP10L2B9ZVM9 353 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 MMEP08473 750 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 RHBDL3P58872 404 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 EDRF1Q3B7T1 1238 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 BCAS3Q9H6U6 928 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 TBK1Q9UHD2 729 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 USP21Q9UK80 565 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 UBAP1LF5GYI3 381 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 PDXKO00764 312 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 ZBTB39O15060 712 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 FOSP01100 380 aaPredicted RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 FTLP02792 175 aaPredicted RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 NAA25Q14CX7 972 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 SHROOM1Q2M3G4 852 aaPredicted RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 BANK1Q8NDB2 785 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 LAMB4A4D0S4 1761 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 DUOX1Q9NRD9 1551 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 SORBS3O60504 671 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 PPP1R11O60927 126 aaPredicted RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 FAM107AO95990 144 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 FGFR4P22455 802 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 SOX5P35711 763 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 BIRC3Q13489 604 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 PPP1R18Q6NYC8 613 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 CDC42EP5Q6NZY7 148 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 IQCKQ8N0W5 287 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 INPP4AQ96PE3 977 aaPredicted RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 MYCBPQ99417 103 aaPredicted RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 TACO1Q9BSH4 297 aaKnown RBP12.85□□□□□ -0.35
MSH6-204ENST00000445503 ZNF577Q9BSK1 485 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 HAUS2Q9NVX0 235 aa12.85□□□□□ -0.35
MSH6-204ENST00000445503 MYCLP12524 364 aaPredicted RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 SMARCA1P28370 1054 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 COG2Q14746 738 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 SNCBQ16143 134 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 INTS2Q9H0H0 1204 aaKnown RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 TMBIM4Q9HC24 238 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 PLCB1Q9NQ66 1216 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 AIPL1Q9NZN9 384 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 LOC102724159A0A0B4J2E5 919 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 CLRN2A0PK11 232 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 ATMINO43313 823 aaPredicted RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 FLT3P36888 993 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 KCNJ1P48048 391 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 PWP2Q15269 919 aaKnown RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 TBC1D1Q86TI0 1168 aaPredicted RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 PLVAPQ9BX97 442 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 STMN4Q9H169 189 aaPredicted RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 PARP4Q9UKK3 1724 aaKnown RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 ALS2Q96Q42 1657 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 SPATA31A5Q5VU36 1347 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 SPATA31A7Q8IWB4 1347 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms