RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TCEANC2Q96MN5 208 aa8.8□□□□□ -1
CD44-211ENST00000442151 MAP7D2Q96T17 732 aa8.8□□□□□ -1
CD44-211ENST00000442151 JPH2Q9BR39 696 aaPredicted RBP8.8□□□□□ -1
CD44-211ENST00000442151 C17orf80Q9BSJ5 609 aa8.8□□□□□ -1
CD44-211ENST00000442151 SLC26A6Q9BXS9 759 aa8.8□□□□□ -1
CD44-211ENST00000442151 AGXT2Q9BYV1 514 aa8.8□□□□□ -1
CD44-211ENST00000442151 UBE2ZQ9H832 354 aaPredicted RBP8.8□□□□□ -1
CD44-211ENST00000442151 FAM217BQ9NTX9 383 aaPredicted RBP8.8□□□□□ -1
CD44-211ENST00000442151 SAMM50Q9Y512 469 aa8.8□□□□□ -1
CD44-211ENST00000442151 ADGRA3Q8IWK6 1321 aa8.79□□□□□ -1
CD44-211ENST00000442151 PRUNE2Q8WUY3 3088 aa8.79□□□□□ -1
CD44-211ENST00000442151 TET1Q8NFU7 2136 aa8.79□□□□□ -1
CD44-211ENST00000442151 DENND3A2RUS2 1198 aa8.79□□□□□ -1
CD44-211ENST00000442151 EPOPA6NHQ4 379 aa8.79□□□□□ -1
CD44-211ENST00000442151 DEXIO95424 95 aa8.79□□□□□ -1
CD44-211ENST00000442151 ZSCAN20P17040 1043 aaPredicted RBP8.79□□□□□ -1
CD44-211ENST00000442151 CDC27P30260 824 aa8.79□□□□□ -1
CD44-211ENST00000442151 DNM2P50570 870 aa8.79□□□□□ -1
CD44-211ENST00000442151 ANKRD1Q15327 319 aa8.79□□□□□ -1
CD44-211ENST00000442151 TCTN1Q2MV58 587 aa8.79□□□□□ -1
CD44-211ENST00000442151 PDE12Q6L8Q7 609 aaKnown RBP8.79□□□□□ -1
CD44-211ENST00000442151 LAPTM4BQ86VI4 370 aa8.79□□□□□ -1
CD44-211ENST00000442151 RNF25Q96BH1 459 aaPredicted RBP8.79□□□□□ -1
CD44-211ENST00000442151 PABPC5Q96DU9 382 aaKnown RBP8.79□□□□□ -1
CD44-211ENST00000442151 PCYT2Q99447 389 aa8.79□□□□□ -1
CD44-211ENST00000442151 TEKT3Q9BXF9 490 aa8.79□□□□□ -1
CD44-211ENST00000442151 TMEM260Q9NX78 707 aa8.79□□□□□ -1
CD44-211ENST00000442151 PRKAG3Q9UGI9 489 aa8.79□□□□□ -1
CD44-211ENST00000442151 PADI3Q9ULW8 664 aa8.79□□□□□ -1
CD44-211ENST00000442151 PCDHB12Q9Y5F1 795 aa8.79□□□□□ -1
CD44-211ENST00000442151 IGSF9BQ9UPX0 1349 aa8.79□□□□□ -1
CD44-211ENST00000442151 DDX39AO00148 427 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 DGKIO75912 1065 aa8.78□□□□□ -1
CD44-211ENST00000442151 PDIA3P30101 505 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 CD52P31358 61 aa8.78□□□□□ -1
CD44-211ENST00000442151 SARSP49591 514 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 UBE3AQ05086 875 aa8.78□□□□□ -1
CD44-211ENST00000442151 NFX1Q12986 1120 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 ITGB3BPQ13352 177 aaPredicted RBP8.78□□□□□ -1
CD44-211ENST00000442151 PRR16Q569H4 304 aa8.78□□□□□ -1
CD44-211ENST00000442151 SPOUT1Q5T280 376 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 TMCO2Q7Z6W1 182 aaPredicted RBP8.78□□□□□ -1
CD44-211ENST00000442151 WASF1Q92558 559 aa8.78□□□□□ -1
CD44-211ENST00000442151 CLP1Q92989 425 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 INO80BQ9C086 356 aaPredicted RBP8.78□□□□□ -1
CD44-211ENST00000442151 ELAC1Q9H777 363 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 PUF60Q9UHX1 559 aaKnown RBP8.78□□□□□ -1
CD44-211ENST00000442151 MAFBQ9Y5Q3 323 aaPredicted RBP8.78□□□□□ -1
CD44-211ENST00000442151 COL4A6Q14031 1691 aa8.78□□□□□ -1
CD44-211ENST00000442151 MARCH6O60337 910 aa8.77□□□□□ -1
CD44-211ENST00000442151 GAS7O60861 476 aa8.77□□□□□ -1
CD44-211ENST00000442151 ARHGEF15O94989 841 aa8.77□□□□□ -1
CD44-211ENST00000442151 SRGAP2BP0DMP2 458 aa8.77□□□□□ -1
CD44-211ENST00000442151 SKIP12755 728 aa8.77□□□□□ -1
CD44-211ENST00000442151 ALADP13716 330 aa8.77□□□□□ -1
CD44-211ENST00000442151 TYW1BQ6NUM6 668 aa8.77□□□□□ -1
CD44-211ENST00000442151 MOXD1Q6UVY6 613 aa8.77□□□□□ -1
CD44-211ENST00000442151 SLC24A5Q71RS6 500 aa8.77□□□□□ -1
CD44-211ENST00000442151 KRT25Q7Z3Z0 450 aa8.77□□□□□ -1
CD44-211ENST00000442151 METTL13Q8N6R0 699 aa8.77□□□□□ -1
CD44-211ENST00000442151 CYP2W1Q8TAV3 490 aa8.77□□□□□ -1
CD44-211ENST00000442151 ZNF689Q96CS4 500 aaPredicted RBP8.77□□□□□ -1
CD44-211ENST00000442151 PGBD1Q96JS3 809 aa8.77□□□□□ -1
CD44-211ENST00000442151 POP1Q99575 1024 aaKnown RBP8.77□□□□□ -1
CD44-211ENST00000442151 ATP6V0A4Q9HBG4 840 aa8.77□□□□□ -1
CD44-211ENST00000442151 DISC1Q9NRI5 854 aa8.77□□□□□ -1
CD44-211ENST00000442151 RABGEF1Q9UJ41 708 aa8.77□□□□□ -1
CD44-211ENST00000442151 PCDHA4Q9UN74 947 aa8.77□□□□□ -1
CD44-211ENST00000442151 PPME1Q9Y570 386 aa8.77□□□□□ -1
CD44-211ENST00000442151 SPTBN5Q9NRC6 3674 aaKnown RBP8.77□□□□□ -1.01
CD44-211ENST00000442151 MICAL3Q7RTP6 2002 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 IGLV3-22A0A075B6J6 115 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 FAM86B1E9PN63 330 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 BAG4O95429 457 aaKnown RBP8.77□□□□□ -1.01
CD44-211ENST00000442151 FAM86B2P0C5J1 330 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 KCNA5P22460 613 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 FOSBP53539 338 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 TFF2Q03403 129 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 PKN1Q16512 942 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 Q4G0T1 1027 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 LCE2AQ5TA79 106 aaPredicted RBP8.77□□□□□ -1.01
CD44-211ENST00000442151 PTCRAQ6ISU1 281 aaPredicted RBP8.77□□□□□ -1.01
CD44-211ENST00000442151 EP400NLQ6ZTU2 488 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 KIAA0319LQ8IZA0 1049 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 BRMS1Q9HCU9 246 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 RGS18Q9NS28 235 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 PDRG1Q9NUG6 133 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 GABBR1Q9UBS5 961 aa8.77□□□□□ -1.01
CD44-211ENST00000442151 ARIH1Q9Y4X5 557 aaPredicted RBP8.77□□□□□ -1.01
CD44-211ENST00000442151 CYP3A7-CYP3A51PA0A087WV96 503 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 GRXCR2A6NFK2 248 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 DHX15O43143 795 aaKnown RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 MMP1P03956 469 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 GCFC2P16383 781 aaKnown RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 CYP3A7P24462 503 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 KCNQ1P51787 676 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 ANAPC15P60006 121 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 CCT2P78371 535 aaKnown RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 NONOQ15233 471 aaKnown RBP eCLIP8.76□□□□□ -1.01
CD44-211ENST00000442151 XKR3Q5GH77 459 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms