RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 RASA1P20936 1047 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 CASP4P49662 377 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 PDE6CP51160 858 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 SNAP25P60880 206 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 SEMA3FQ13275 785 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 BIRC2Q13490 618 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 CRYMQ14894 314 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 ASTE1Q2TB18 679 aaPredicted RBP9.8□□□□□ -0.84
COPB1-202ENST00000439561 C10orf76Q5T2E6 689 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 CHADLQ6NUI6 762 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 ZNF449Q6P9G9 518 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 PHLDB2Q86SQ0 1253 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 JAMLQ86YT9 394 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 TRIM59Q8IWR1 403 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 ACTRT1Q8TDG2 376 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 RPGRQ92834 1020 aaKnown RBP9.8□□□□□ -0.84
COPB1-202ENST00000439561 ADAM33Q9BZ11 813 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 KIF9Q9HAQ2 790 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 RGPD5Q99666 1765 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 KDM3AQ9Y4C1 1321 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 PALM3A6NDB9 673 aaPredicted RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 C6orf229H3BNL8 230 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 NTSR2O95665 410 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 MYBP10242 640 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 SETDB1Q15047 1291 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 SLC35G1Q2M3R5 365 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 KIAA1755Q5JYT7 1200 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 C6orf118Q5T5N4 469 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 CAPRIN2Q6IMN6 1127 aaKnown RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 TTBK2Q6IQ55 1244 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 SCFD1Q8WVM8 642 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 ARHGEF2Q92974 986 aaKnown RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 ZNF622Q969S3 477 aaKnown RBP eCLIP9.79□□□□□ -0.846e-21■□□□□ 8.9
COPB1-202ENST00000439561 CALR3Q96L12 384 aaKnown RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 ANKRD2Q9GZV1 360 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 BHMT2Q9H2M3 363 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 ATP6V0A4Q9HBG4 840 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 DNAJC12Q9UKB3 198 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 ATXN2Q99700 1313 aaKnown RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 NR3C1P04150 777 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 FERP16591 822 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 DRAP1Q14919 205 aaPredicted RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 ECM1Q16610 540 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 FAM186BQ8IYM0 893 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 DAGLBQ8NCG7 672 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 WDR66Q8TBY9 1149 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 AGAP11Q8TF27 550 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.79□□□□□ -0.84
COPB1-202ENST00000439561 SYN2Q92777 582 aaPredicted RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 ERP44Q9BS26 406 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 KDM4CQ9H3R0 1056 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 ETNK1Q9HBU6 452 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 LRRC4CQ9HCJ2 640 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 SPATS2LQ9NUQ6 558 aaKnown RBP9.79□□□□□ -0.84
COPB1-202ENST00000439561 PPP1R9AQ9ULJ8 1098 aa9.79□□□□□ -0.84
COPB1-202ENST00000439561 THAP12O43422 761 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 EXOC3O60645 756 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 ADCY2Q08462 1091 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 TNIP1Q15025 636 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 C6orf89Q6UWU4 347 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 NSMFQ6X4W1 530 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 TPH2Q8IWU9 490 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 PIGOQ8TEQ8 1089 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 SCFD2Q8WU76 684 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 CCT6BQ92526 530 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 P3H4Q92791 437 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 A1CFQ9NQ94 594 aaKnown RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 PKD2L1Q9P0L9 805 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 FRMD4BQ9Y2L6 1034 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 A8MUI8 341 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 FOXO6A8MYZ6 492 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 LMNB1P20700 586 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 PON1P27169 355 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 PSEN1P49768 467 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 CASP5P51878 434 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 DDB1Q16531 1140 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 GNPTABQ3T906 1256 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 SBK1Q52WX2 424 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 ERMARDQ5T6L9 678 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 CYP4F22Q6NT55 531 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 BARGINQ6ZT62 677 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 BRINP3Q76B58 766 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 SRRM1Q8IYB3 904 aaKnown RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 SLC17A8Q8NDX2 589 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 SPZ1Q9BXG8 430 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 PABPC3Q9H361 631 aaKnown RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 LMTK3Q96Q04 1460 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 MYO5AQ9Y4I1 1855 aaKnown RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 MYH6P13533 1939 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 RSPH10B2B2RC85 870 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 ATMINO43313 823 aaPredicted RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 CAMTA2O94983 1202 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 RSPH10BP0C881 870 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 ALDH5A1P51649 535 aaPredicted RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 KNOP1Q1ED39 458 aaKnown RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 CCDC137Q6PK04 289 aaKnown RBP9.78□□□□□ -0.84
COPB1-202ENST00000439561 GSTA5Q7RTV2 222 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 SAAL1Q96ER3 474 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 AIPL1Q9NZN9 384 aa9.78□□□□□ -0.84
COPB1-202ENST00000439561 TRIM33Q9UPN9 1127 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms