RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 LRRC53A6NM62 1247 aa18.44■□□□□ 0.54
PTPRF-209ENST00000438120 TWF2Q6IBS0 349 aaKnown RBP18.44■□□□□ 0.54
PTPRF-209ENST00000438120 SWSAP1Q6NVH7 229 aa18.44■□□□□ 0.54
PTPRF-209ENST00000438120 PPP1R2P3Q6NXS1 205 aa18.44■□□□□ 0.54
PTPRF-209ENST00000438120 TTC1Q99614 292 aa18.44■□□□□ 0.54
PTPRF-209ENST00000438120 LY9Q9HBG7 655 aa18.44■□□□□ 0.54
PTPRF-209ENST00000438120 HEY1Q9Y5J3 304 aa18.44■□□□□ 0.54
PTPRF-209ENST00000438120 CDK12Q9NYV4 1490 aaPredicted RBP18.43■□□□□ 0.54
PTPRF-209ENST00000438120 MGEA5O60502 916 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 CLCN6P51797 869 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 SPP2Q13103 211 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 TRIM67Q6ZTA4 783 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 TRIM42Q8IWZ5 723 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 SNX24Q9Y343 169 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 PI4K2BG5E9Z4 385 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 CA4P22748 312 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 EFCAB13Q8IY85 973 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 MARCH10Q8NA82 808 aaPredicted RBP18.43■□□□□ 0.54
PTPRF-209ENST00000438120 SAYSD1Q9NPB0 183 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 PPP1R12AO14974 1030 aaPredicted RBP18.43■□□□□ 0.54
PTPRF-209ENST00000438120 GPSM2P81274 684 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 ZNF699Q32M78 642 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 TTC30AQ86WT1 665 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 MTRQ99707 1265 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 COASYQ13057 564 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 MAPK6Q16659 721 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 UTYO14607 1347 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 CPDO75976 1380 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 PDIK1LQ8N165 341 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 PDCD6IPQ8WUM4 868 aaKnown RBP18.43■□□□□ 0.54
PTPRF-209ENST00000438120 SPATA17Q96L03 361 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 RNF146Q9NTX7 359 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 FEM1BQ9UK73 627 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 PPP1R9AQ9ULJ8 1098 aa18.43■□□□□ 0.54
PTPRF-209ENST00000438120 GCKP35557 465 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 TXNRD1Q16881 649 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 NCAPGQ9BPX3 1015 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 USH1CQ9Y6N9 552 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 LDHAP00338 332 aaKnown RBP18.42■□□□□ 0.54
PTPRF-209ENST00000438120 RASIP1Q5U651 963 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 CENPUQ71F23 418 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 CCHCR1Q8TD31 782 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 KLHL29Q96CT2 875 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 HOXC10Q9NYD6 342 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 TTC37Q6PGP7 1564 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 DENND3A2RUS2 1198 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 HSPA6P17066 643 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 SLC8A1P32418 973 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 HDLBPQ00341 1268 aaKnown RBP18.42■□□□□ 0.54
PTPRF-209ENST00000438120 C11orf70Q9BRQ4 267 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 CFAP74Q9C0B2 1584 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 PEX19P40855 299 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 YWHAHQ04917 246 aaPredicted RBP18.42■□□□□ 0.54
PTPRF-209ENST00000438120 RCSD1Q6JBY9 416 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 ZNF746Q6NUN9 644 aaPredicted RBP18.42■□□□□ 0.54
PTPRF-209ENST00000438120 ADGRF4Q8IZF3 695 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 SAAL1Q96ER3 474 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 GABBR1Q9UBS5 961 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 RNF14Q9UBS8 474 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 SCINQ9Y6U3 715 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 KCNQ2O43526 872 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 EVI5O60447 810 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 TRPA1O75762 1119 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 NSUN2Q08J23 767 aaKnown RBP eCLIP18.42■□□□□ 0.54
PTPRF-209ENST00000438120 GCNAQ96QF7 691 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 SPATA31A3Q5VYP0 1347 aa18.42■□□□□ 0.54
PTPRF-209ENST00000438120 PHEXP78562 749 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 CASP8Q14790 479 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 XXYLT1Q8NBI6 393 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 ZNF302Q9NR11 478 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 GYS2P54840 703 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 CYFIP1Q7L576 1253 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 C2orf69Q8N8R5 385 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 KCNH2Q12809 1159 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 EPS15L1Q9UBC2 864 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 PCSK1NQ9UHG2 260 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 MOSPD1Q9UJG1 213 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 TTC7AQ9ULT0 858 aaPredicted RBP18.41■□□□□ 0.54
PTPRF-209ENST00000438120 CREB3O43889 395 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 NR1D1P20393 614 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 ZNF211Q13398 564 aaPredicted RBP18.41■□□□□ 0.54
PTPRF-209ENST00000438120 TEX2Q8IWB9 1127 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 RHOT2Q8IXI1 618 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 CXorf38Q8TB03 319 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 OTUD5Q96G74 571 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 SAMD9LQ8IVG5 1584 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 MROH7-TTC4A0A0A0MT08 1334 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 ARHGEF37A1IGU5 675 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.41■□□□□ 0.54
PTPRF-209ENST00000438120 RNF25Q96BH1 459 aaPredicted RBP18.41■□□□□ 0.54
PTPRF-209ENST00000438120 HACD3Q9P035 362 aa18.41■□□□□ 0.54
PTPRF-209ENST00000438120 TTC17Q96AE7 1141 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 ABHD10Q9NUJ1 306 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 KLHL8Q9P2G9 620 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-209ENST00000438120 TDP2O95551 362 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 GSPT2Q8IYD1 628 aaKnown RBP18.4■□□□□ 0.54
PTPRF-209ENST00000438120 RPAP1Q9BWH6 1393 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-209ENST00000438120 TJP3O95049 919 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 KRT10P13645 584 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 ART3Q13508 389 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms