RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TMEM260Q9NX78 707 aa13.68□□□□□ -0.22
PTPRF-208ENST00000437607 CLDND1Q9NY35 253 aa13.68□□□□□ -0.22
PTPRF-208ENST00000437607 CEP131Q9UPN4 1083 aa13.68□□□□□ -0.22
PTPRF-208ENST00000437607 UBIAD1Q9Y5Z9 338 aa13.68□□□□□ -0.22
PTPRF-208ENST00000437607 KMT2EQ8IZD2 1858 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 YEATS4O95619 227 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 RB1P06400 928 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 ATP2B1P20020 1258 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 PTMSP20962 102 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 CEBPZQ03701 1054 aaKnown RBP13.67□□□□□ -0.22
PTPRF-208ENST00000437607 HYAL1Q12794 435 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 CAMK1Q14012 370 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 STK38Q15208 465 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 EARS2Q5JPH6 523 aaKnown RBP13.67□□□□□ -0.22
PTPRF-208ENST00000437607 TAF2Q6P1X5 1199 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 NEK8Q86SG6 692 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 RTN4RL1Q86UN2 441 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-208ENST00000437607 CRIPAKQ8N1N5 446 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 TBCKQ8TEA7 893 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 SEPT1Q8WYJ6 367 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 CHAMP1Q96JM3 812 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 SPATA32Q96LK8 384 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 USP28Q96RU2 1077 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 PCYT2Q99447 389 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 NAP1L4Q99733 375 aaKnown RBP13.67□□□□□ -0.22
PTPRF-208ENST00000437607 ERAP1Q9NZ08 941 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 PKD2L1Q9P0L9 805 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 TUBE1Q9UJT0 475 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 CDY2AQ9Y6F7 541 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 USP34Q70CQ2 3546 aa13.67□□□□□ -0.22
PTPRF-208ENST00000437607 ADAMTS3O15072 1205 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 DGKIO75912 1065 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 GTF2F1P35269 517 aaKnown RBP eCLIP13.66□□□□□ -0.22
PTPRF-208ENST00000437607 NASPP49321 788 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-208ENST00000437607 LETM2Q2VYF4 491 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 EP400NLQ6ZTU2 488 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 KCNG4Q8TDN1 519 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 CDHR1Q96JP9 859 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 GDPD2Q9HCC8 539 aa13.66□□□□□ -0.22
PTPRF-208ENST00000437607 LINC01565O15544 149 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 TBX10O75333 385 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 ALADP13716 330 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 GCFC2P16383 781 aaKnown RBP13.65□□□□□ -0.22
PTPRF-208ENST00000437607 DNAJB1P25685 340 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 CD52P31358 61 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 MCM4P33991 863 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 SREBF1P36956 1147 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 IGBP1P78318 339 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 MRPS6P82932 125 aaKnown RBP13.65□□□□□ -0.22
PTPRF-208ENST00000437607 ORC2Q13416 577 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-208ENST00000437607 MTMR1Q13613 665 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 NBR1Q14596 966 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 SF3A1Q15459 793 aaKnown RBP13.65□□□□□ -0.22
PTPRF-208ENST00000437607 CLUL1Q15846 466 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 TSHZ1Q6ZSZ6 1077 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 GLG1Q92896 1179 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 C11orf84Q9BUA3 381 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-208ENST00000437607 LMAN2LQ9H0V9 348 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 SMARCAD1Q9H4L7 1026 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 JADE2Q9NQC1 790 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 TFIP11Q9UBB9 837 aaKnown RBP13.65□□□□□ -0.22
PTPRF-208ENST00000437607 PRKAG3Q9UGI9 489 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 MYO10Q9HD67 2058 aa13.65□□□□□ -0.22
PTPRF-208ENST00000437607 MBTPS2O43462 519 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 DCXO43602 365 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 NEMFO60524 1076 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 CCNT1O60563 726 aaKnown RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 INSRRP14616 1297 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 MCM7P33993 719 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 IRS1P35568 1242 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 TMEM62Q0P6H9 643 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 BTG3Q14201 252 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 SMAD2Q15796 467 aaKnown RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 RSPH3Q86UC2 560 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 ADHFE1Q8IWW8 467 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 TMEM87AQ8NBN3 555 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 CYP2W1Q8TAV3 490 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 LEO1Q8WVC0 666 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 TRAPPC12Q8WVT3 735 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 FAM49AQ9H0Q0 323 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 ALG13Q9NP73 1137 aaKnown RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 PLAGL2Q9UPG8 496 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 RWDD3Q9Y3V2 267 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 PCDHB6Q9Y5E3 794 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 CLIC4Q9Y696 253 aa13.64□□□□□ -0.23
PTPRF-208ENST00000437607 MRPL42Q9Y6G3 142 aaKnown RBP13.64□□□□□ -0.23
PTPRF-208ENST00000437607 GOLGA6L4A6NEF3 574 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 SPTLC2O15270 562 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 NCK2O43639 380 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 CSPG5O95196 566 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 TOB1P50616 345 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-208ENST00000437607 ADAM15Q13444 863 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 PLCB4Q15147 1175 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 LINC00301Q8NCQ3 95 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 P2RX5Q93086 422 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 PLVAPQ9BX97 442 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 JPH1Q9HDC5 661 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-208ENST00000437607 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.63□□□□□ -0.23
PTPRF-208ENST00000437607 KCNH7Q9NS40 1196 aa13.63□□□□□ -0.23
PTPRF-208ENST00000437607 FAM50BQ9Y247 325 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms