RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ARFIP2P53365 341 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 ADAM9Q13443 819 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 TFDP1Q14186 410 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 MFSD4BQ5TF39 518 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RASSF3Q86WH2 238 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 CCDC126Q96EE4 140 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 MRPL1Q9BYD6 325 aaKnown RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 FANCLQ9NW38 375 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 ZBTB22O15209 634 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 MTERF3Q96E29 417 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 DDX28Q9NUL7 540 aaKnown RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 KDM5CP41229 1560 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 CAMSAP1Q5T5Y3 1602 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RALBP11234 206 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 CARSP49589 748 aaKnown RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 BFSP2Q13515 415 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PRPF18Q99633 342 aaKnown RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 PCDHA12Q9UN75 941 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PHF8Q9UPP1 1060 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 TIMM50Q3ZCQ8 353 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PRR23BQ6ZRT6 265 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 ZNF654Q8IZM8 581 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 TINF2Q9BSI4 451 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 AIPL1Q9NZN9 384 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 KATNA1O75449 491 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 HADHAP40939 763 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 SUCLA2Q9P2R7 463 aaPredicted RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 CHL1O00533 1208 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 WDR47O94967 919 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 HSPA4LO95757 839 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 KRT20P35900 424 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 OCRLQ01968 901 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 KRT24Q2M2I5 525 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 KLHL12Q53G59 568 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 USP33Q8TEY7 942 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 SCFD1Q8WVM8 642 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 LRRC2Q9BYS8 371 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 CIDEBQ9UHD4 219 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 APPL1Q9UKG1 709 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 GPAA1O43292 621 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PDE9AO76083 593 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 TMOD1P28289 359 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RMND5BQ96G75 393 aaPredicted RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 NACC1Q96RE7 527 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PCDHA7Q9UN72 937 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 GAS7O60861 476 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 S100A9P06702 114 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 MDH1P40925 334 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 RAB25P57735 213 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 SKOR1P84550 965 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 XIAPP98170 497 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 MECOMQ03112 1051 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 TCP11X2Q5H9J9 407 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 SPATA21Q7Z572 469 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 ZNF229Q9UJW7 825 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 VIRMAQ69YN4 1812 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 ESYT2A0FGR8 921 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 RPL22P35268 128 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 GJC1P36383 396 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 PKN2Q16513 984 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 MGARPQ8TDB4 240 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 TSPAN17Q96FV3 270 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 DACH2Q96NX9 599 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 SMIM31A0A1B0GVY4 71 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 PMS2P54278 862 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 ADKP55263 362 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 XPO6Q96QU8 1125 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 SH3GL1Q99961 368 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 KRT82Q9NSB4 513 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 KCND2Q9NZV8 630 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 TBC1D4O60343 1298 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 MAPK4P31152 587 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 SNF8Q96H20 258 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 TGS1Q96RS0 853 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 CACNA2D2Q9NY47 1150 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 MRPL11Q9Y3B7 192 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 EFTUD2Q15029 972 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS53-204ENST00000437048 P3H1Q32P28 736 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 SCN3BQ9NY72 215 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 NRBP1Q9UHY1 535 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 LGALS16A8MUM7 142 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 E2F6O75461 281 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 KCNA3P22001 575 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 DSG1Q02413 1049 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 SUPT20HQ8NEM7 779 aa7.65□□□□□ -1.18
VPS53-204ENST00000437048 PAPOLBQ9NRJ5 636 aaKnown RBP7.65□□□□□ -1.18
VPS53-204ENST00000437048 COPS2P61201 443 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 E2F5Q15329 346 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 LMBR1LQ6UX01 489 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 SETDB2Q96T68 719 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 CHPF2Q9P2E5 772 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 PVALEFA0A1B0GWK0 134 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 SLCO1B7G3V0H7 640 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 SLC1A4P43007 532 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 STX5Q13190 355 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 NAALADL2Q58DX5 795 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 SWT1Q5T5J6 900 aaKnown RBP7.65□□□□□ -1.19
VPS53-204ENST00000437048 KRT73Q86Y46 540 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 NEUROG2Q9H2A3 272 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 TIMMDC1Q9NPL8 285 aa7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms