RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 SLITRK5O94991 958 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 AMY2AP04746 511 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 AMY2BP19961 511 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 BTKQ06187 659 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 C16orf59Q7L2K0 433 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 LRTOMTQ8WZ04 291 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 JAM3Q9BX67 310 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 CDIP1Q9H305 208 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 SP110Q9HB58 689 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 MSRAQ9UJ68 235 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 LIMCH1Q9UPQ0 1083 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 A2MP01023 1474 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 SHISA3A0PJX4 238 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 CDC14CA4D256 554 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 FAM155AB1AL88 458 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 ZNF561-AS1K7EIQ3 104 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 ENPP1P22413 925 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 GALNT1Q10472 559 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 IFI16Q16666 785 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 ANO6Q4KMQ2 910 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 MZT2BQ6NZ67 158 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 CYP26C1Q6V0L0 522 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 KCNK18Q7Z418 384 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 OR8H2Q8N162 312 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 VWA5B2Q8N398 1253 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 NELL1Q92832 810 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 FBXL18Q96ME1 805 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 ALDH8A1Q9H2A2 487 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 PRDM12Q9H4Q4 367 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 FAM105AQ9NUU6 356 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 ZNF281Q9Y2X9 895 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 TMX2Q9Y320 296 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 DNMT1P26358 1616 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 RNF17Q9BXT8 1623 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 PTPN23Q9H3S7 1636 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 EIF3FO00303 357 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 LPLP06858 475 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 PDIA3P30101 505 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 ZBED6P86452 979 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 POU4F1Q01851 419 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 HSF5Q4G112 596 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 DGKKQ5KSL6 1271 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 EXOSC6Q5RKV6 272 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 INTS11Q5TA45 600 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 KLHL23Q8NBE8 558 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 CXorf38Q8TB03 319 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 PCIF1Q9H4Z3 704 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 RIC8AQ9NPQ8 531 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 CHST7Q9NS84 486 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 PDP2Q9P2J9 529 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 PRDM4Q9UKN5 801 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 SNX13Q9Y5W8 968 aa5.99□□□□□ -1.45
VPS13A-207ENST00000419472 SPAG9O60271 1321 aaKnown RBP5.99□□□□□ -1.45
VPS13A-207ENST00000419472 A0A0G2JS52 829 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 GFPT2O94808 682 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 ADH5P11766 374 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 EDNRBP24530 442 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 CNTFP26441 200 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 ADH6P28332 368 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 CACNB3P54284 484 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 CCT2P78371 535 aaKnown RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 ZNF174Q15697 407 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 CRY1Q16526 586 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 VPS53Q5VIR6 699 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 IZUMO3Q5VZ72 239 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 RETSATQ6NUM9 610 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 THEMISQ8N1K5 641 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 GIMAP8Q8ND71 665 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 PLBD2Q8NHP8 589 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 NUP62CLQ9H1M0 184 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 MBIPQ9NS73 344 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 NOL7Q9UMY1 257 aaKnown RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 MAGED2Q9UNF1 606 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 SLC12A8A0AV02 714 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 CAPN8A6NHC0 703 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 SIGLEC6O43699 453 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 LRIG2O94898 1065 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 WISP1O95388 367 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 STT3AP46977 705 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 SEPHS1P49903 392 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 AGFG1P52594 562 aaKnown RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 PMS2P11Q13670 270 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 FSCN1Q16658 493 aaKnown RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 HIBCHQ6NVY1 386 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 APOA5Q6Q788 366 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 C20orf204Q6ZNR8 217 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 DYMQ7RTS9 669 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 DPP9Q86TI2 863 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 KCT2Q8NC54 265 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 RNF141Q8WVD5 230 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 CHAMP1Q96JM3 812 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 C22orf23Q9BZE7 217 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 ATXN3LQ9H3M9 355 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 GPATCH2Q9NW75 528 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 RNF112Q9ULX5 631 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 RRBP1Q9P2E9 1410 aaKnown RBP5.98□□□□□ -1.45
VPS13A-207ENST00000419472 C3P01024 1663 aa5.98□□□□□ -1.45
VPS13A-207ENST00000419472 NPATQ14207 1427 aa5.97□□□□□ -1.45
VPS13A-207ENST00000419472 RAB3GAP2Q9H2M9 1393 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms