RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 HSCBQ8IWL3 235 aa23.23■■□□□ 1.31
VSX1-204ENST00000409958 CEP170P1Q96L14 293 aa23.23■■□□□ 1.31
VSX1-204ENST00000409958 JPH2Q9BR39 696 aaPredicted RBP23.23■■□□□ 1.31
VSX1-204ENST00000409958 TTYH1Q9H313 450 aaPredicted RBP23.23■■□□□ 1.31
VSX1-204ENST00000409958 SEMA6BQ9H3T3 888 aa23.23■■□□□ 1.31
VSX1-204ENST00000409958 MTMR10Q9NXD2 777 aa23.23■■□□□ 1.31
VSX1-204ENST00000409958 AKT3Q9Y243 479 aa23.23■■□□□ 1.31
VSX1-204ENST00000409958 GINS2Q9Y248 185 aa23.23■■□□□ 1.31
VSX1-204ENST00000409958 MAFO75444 373 aaPredicted RBP23.22■■□□□ 1.31
VSX1-204ENST00000409958 AMHP03971 560 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 CD52P31358 61 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 FXR2P51116 673 aaKnown RBP eCLIP23.22■■□□□ 1.31
VSX1-204ENST00000409958 NPEPPSP55786 919 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 KIZQ2M2Z5 673 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 FAM43BQ6ZT52 329 aaPredicted RBP23.22■■□□□ 1.31
VSX1-204ENST00000409958 BRAPQ7Z569 592 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 EXOC8Q8IYI6 725 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 CDHR5Q9HBB8 845 aa23.22■■□□□ 1.31
VSX1-204ENST00000409958 YBX2Q9Y2T7 364 aaKnown RBP23.22■■□□□ 1.31
VSX1-204ENST00000409958 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.21■■□□□ 1.31
VSX1-204ENST00000409958 RFC5P40937 340 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 DNM2P50570 870 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 PAK2Q13177 524 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 ERMNQ8TAM6 284 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 FTHL17Q9BXU8 183 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 NKX2-4Q9H2Z4 354 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 TUFT1Q9NNX1 390 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 PADI3Q9ULW8 664 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 GBF1Q92538 1859 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 PTPRSQ13332 1948 aa23.21■■□□□ 1.31
VSX1-204ENST00000409958 VPS37CA5D8V6 355 aaPredicted RBP23.2■■□□□ 1.3
VSX1-204ENST00000409958 GJB5O95377 273 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 SPATA31C1P0DKV0 1188 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 SYT1P21579 422 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 PRPHP41219 470 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 NLRP11P59045 1033 aaKnown RBP23.2■■□□□ 1.3
VSX1-204ENST00000409958 CDC42EP1Q00587 391 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 DRP2Q13474 957 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 PDIA5Q14554 519 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 ODR4Q5SWX8 454 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 MYOCDQ8IZQ8 938 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 ZNF579Q8NAF0 562 aaKnown RBP23.2■■□□□ 1.3
VSX1-204ENST00000409958 TMEM40Q8WWA1 233 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 SLC7A3Q8WY07 619 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 PPP1R16BQ96T49 567 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 OSMRQ99650 979 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 POLR3CQ9BUI4 534 aaPredicted RBP23.2■■□□□ 1.3
VSX1-204ENST00000409958 ADAMTS10Q9H324 1103 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 ZNF576Q9H609 170 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 DHX33Q9H6R0 707 aaKnown RBP23.2■■□□□ 1.3
VSX1-204ENST00000409958 SLC28A3Q9HAS3 691 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 ANKEF1Q9NU02 776 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 LOXHD1Q8IVV2 1947 aa23.2■■□□□ 1.3
VSX1-204ENST00000409958 ZBTB39O15060 712 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 TLL1O43897 1013 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 RPS6KA5O75582 802 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 XRCC6P12956 609 aaKnown RBP eCLIP23.19■■□□□ 1.3
VSX1-204ENST00000409958 MYOGP15173 224 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 GPC3P51654 580 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 POLGP54098 1239 aaPredicted RBP23.19■■□□□ 1.3
VSX1-204ENST00000409958 XKR9Q5GH70 373 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 TMCO2Q7Z6W1 182 aaPredicted RBP23.19■■□□□ 1.3
VSX1-204ENST00000409958 CATSPER3Q86XQ3 398 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 ZBED2Q9BTP6 218 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 RAB34Q9BZG1 259 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 FOXD4L1Q9NU39 408 aa23.19■■□□□ 1.3
VSX1-204ENST00000409958 NOC2LQ9Y3T9 749 aaKnown RBP23.19■■□□□ 1.3
VSX1-204ENST00000409958 ENPP3O14638 875 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 MED24O75448 989 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 RPA1P27694 616 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 ATP2C1P98194 919 aaPredicted RBP23.18■■□□□ 1.3
VSX1-204ENST00000409958 HAUS3Q68CZ6 603 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 IGSF22Q8N9C0 903 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 TOP1MTQ969P6 601 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 GUCD1Q96NT3 240 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 RAD9AQ99638 391 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 ERVK-5Q9HDB9 667 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 SUCLA2Q9P2R7 463 aaPredicted RBP23.18■■□□□ 1.3
VSX1-204ENST00000409958 LRWD1Q9UFC0 647 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 STK24Q9Y6E0 443 aa23.18■■□□□ 1.3
VSX1-204ENST00000409958 GPR182O15218 404 aa23.17■■□□□ 1.3
VSX1-204ENST00000409958 GAS2O43903 313 aaKnown RBP23.17■■□□□ 1.3
VSX1-204ENST00000409958 MUTP22033 750 aa23.17■■□□□ 1.3
VSX1-204ENST00000409958 NFX1Q12986 1120 aaKnown RBP23.17■■□□□ 1.3
VSX1-204ENST00000409958 DTHD1Q6ZMT9 781 aa23.17■■□□□ 1.3
VSX1-204ENST00000409958 CA3P07451 260 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 EIF4BP23588 611 aaKnown RBP23.16■■□□□ 1.3
VSX1-204ENST00000409958 RARRES1P49788 294 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 PPP2R2DQ66LE6 453 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 FERMT3Q86UX7 667 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 FAM228AQ86W67 206 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 NLRP7Q8WX94 980 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 NACC1Q96RE7 527 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 ST3GAL5Q9UNP4 418 aa23.16■■□□□ 1.3
VSX1-204ENST00000409958 DARSP14868 501 aaKnown RBP23.15■■□□□ 1.3
VSX1-204ENST00000409958 EMC2Q15006 297 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 IL17AQ16552 155 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 ARL6IP4Q66PJ3 421 aaKnown RBP23.15■■□□□ 1.3
VSX1-204ENST00000409958 FAM117BQ6P1L5 589 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 RTN4RL1Q86UN2 441 aaPredicted RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms