RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 DHX37Q8IY37 1157 aaKnown RBP10.38□□□□□ -0.75
VPS53-203ENST00000401468 HAS1Q92839 578 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 SLC5A5Q92911 643 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 MTMR9Q96QG7 549 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 OSBPL7Q9BZF2 842 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 FTOQ9C0B1 505 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS53-203ENST00000401468 AGO4Q9HCK5 861 aaKnown RBP10.38□□□□□ -0.75
VPS53-203ENST00000401468 KCNH7Q9NS40 1196 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 CHMP5Q9NZZ3 219 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 NOL7Q9UMY1 257 aaKnown RBP10.38□□□□□ -0.75
VPS53-203ENST00000401468 PCDHB6Q9Y5E3 794 aa10.38□□□□□ -0.75
VPS53-203ENST00000401468 MSH4O15457 936 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 DHX15O43143 795 aaKnown RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 CCNT1O60563 726 aaKnown RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 PSMD10O75832 226 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 ARP10275 920 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 HOXD8P13378 290 aaPredicted RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 IGFBP4P22692 258 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 ATP2C1P98194 919 aaPredicted RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 GNL2Q13823 731 aaKnown RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 PTPAQ15257 358 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 KIAA0753Q2KHM9 967 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 LETM2Q2VYF4 491 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 BRDTQ58F21 947 aaPredicted RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 PLA2G2CQ5R387 149 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 RASIP1Q5U651 963 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 PSRC1Q6PGN9 363 aaPredicted RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 CLEC17AQ6ZS10 378 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 PLA2G4DQ86XP0 818 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 HERVK_113Q902F9 699 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 SYMPKQ92797 1274 aaKnown RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 ZBTB10Q96DT7 871 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 FAM20AQ96MK3 541 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 SPATA33Q96N06 139 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 RIT2Q99578 217 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 DDX25Q9UHL0 483 aaKnown RBP10.37□□□□□ -0.75
VPS53-203ENST00000401468 SLC27A5Q9Y2P5 690 aa10.37□□□□□ -0.75
VPS53-203ENST00000401468 RALGAPA2Q2PPJ7 1873 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 EPOPA6NHQ4 379 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 IPO5O00410 1097 aaKnown RBP10.36□□□□□ -0.75
VPS53-203ENST00000401468 NEMFO60524 1076 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 ATP9AO75110 1047 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 BMP15O95972 392 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 IQCF3P0C7M6 154 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 PRPHP41219 470 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 SPIRE1Q08AE8 756 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 ITGB3BPQ13352 177 aaPredicted RBP10.36□□□□□ -0.75
VPS53-203ENST00000401468 ADGRE1Q14246 886 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 GPNMBQ14956 572 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 PRR16Q569H4 304 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 UTP14CQ5TAP6 766 aaKnown RBP10.36□□□□□ -0.75
VPS53-203ENST00000401468 ARL6IP4Q66PJ3 421 aaKnown RBP10.36□□□□□ -0.75
VPS53-203ENST00000401468 FAM173BQ6P4H8 233 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 CYFIP1Q7L576 1253 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 SLFN12Q8IYM2 578 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 GIMAP8Q8ND71 665 aaPredicted RBP10.36□□□□□ -0.75
VPS53-203ENST00000401468 TMEM60Q9H2L4 133 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 ATP6V1DQ9Y5K8 247 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 SLC4A7Q9Y6M7 1214 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 PLXNA4Q9HCM2 1894 aa10.36□□□□□ -0.75
VPS53-203ENST00000401468 C5orf42Q9H799 3197 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 LCHNA4D1U4 455 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 TNFRSF10AO00220 468 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 ATG7O95352 703 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 CA3P07451 260 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 CTSHP09668 335 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 ATP2A2P16615 1042 aaKnown RBP10.35□□□□□ -0.75
VPS53-203ENST00000401468 MCM7P33993 719 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 ZNF76P36508 570 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 DEFB103AP81534 67 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 NEDD9Q14511 834 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 SLC39A14Q15043 492 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 DGKDQ16760 1214 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 CELF3Q5SZQ8 465 aaKnown RBP10.35□□□□□ -0.75
VPS53-203ENST00000401468 NFRKBQ6P4R8 1299 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 METTL7BQ6UX53 244 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 C7orf31Q8N865 590 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 RETREG2Q8NC44 543 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 LINC00301Q8NCQ3 95 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 THAP11Q96EK4 314 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 USP28Q96RU2 1077 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 MLXIPQ9HAP2 919 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 TBC1D22BQ9NU19 505 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 VAV3Q9UKW4 847 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 BDP1A6H8Y1 2624 aa10.35□□□□□ -0.75
VPS53-203ENST00000401468 FNDC1Q4ZHG4 1894 aaPredicted RBP10.34□□□□□ -0.75
VPS53-203ENST00000401468 TMEM265A0A087WTH1 108 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 IGKV6D-21A0A0A0MT36 114 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 NBNO60934 754 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 YEATS4O95619 227 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 OR52Z1P0C646 297 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 MARK3P27448 753 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 PPP2R5CQ13362 524 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 SF3A1Q15459 793 aaKnown RBP10.34□□□□□ -0.75
VPS53-203ENST00000401468 ZNF174Q15697 407 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 CALCRLQ16602 461 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 ZNF618Q5T7W0 954 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 PPP2R2DQ66LE6 453 aa10.34□□□□□ -0.75
VPS53-203ENST00000401468 ZNF746Q6NUN9 644 aaPredicted RBP10.34□□□□□ -0.75
VPS53-203ENST00000401468 IGSF22Q8N9C0 903 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms