RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SUGCTQ9HAC7 445 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 ANKEF1Q9NU02 776 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 XRCC6P12956 609 aaKnown RBP eCLIP24.27■■□□□ 1.48
CLN3-207ENST00000395653 RFC5P40937 340 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 IL17AQ16552 155 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 XKR9Q5GH70 373 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 TSHZ1Q6ZSZ6 1077 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 SLC7A3Q8WY07 619 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 DHX33Q9H6R0 707 aaKnown RBP24.27■■□□□ 1.48
CLN3-207ENST00000395653 AKT3Q9Y243 479 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 EVPLQ92817 2033 aa24.26■■□□□ 1.47
CLN3-207ENST00000395653 LAMA2P24043 3122 aaKnown RBP24.26■■□□□ 1.47
CLN3-207ENST00000395653 ZBTB39O15060 712 aa24.26■■□□□ 1.47
CLN3-207ENST00000395653 VTNP04004 478 aa24.26■■□□□ 1.47
CLN3-207ENST00000395653 GPR153Q6NV75 609 aa24.26■■□□□ 1.47
CLN3-207ENST00000395653 ZNF579Q8NAF0 562 aaKnown RBP24.26■■□□□ 1.47
CLN3-207ENST00000395653 SLC9A7Q96T83 725 aa24.26■■□□□ 1.47
CLN3-207ENST00000395653 GPR32O75388 356 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 KCNJ6P48051 423 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 DNM2P50570 870 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 CRYBB1P53674 252 aaPredicted RBP24.25■■□□□ 1.47
CLN3-207ENST00000395653 POLGP54098 1239 aaPredicted RBP24.25■■□□□ 1.47
CLN3-207ENST00000395653 WDR5P61964 334 aaKnown RBP24.25■■□□□ 1.47
CLN3-207ENST00000395653 MKRN4PQ13434 485 aaPredicted RBP24.25■■□□□ 1.47
CLN3-207ENST00000395653 SF3A1Q15459 793 aaKnown RBP24.25■■□□□ 1.47
CLN3-207ENST00000395653 FAM109BQ6ICB4 259 aaPredicted RBP24.25■■□□□ 1.47
CLN3-207ENST00000395653 SPRYD3Q8NCJ5 442 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 PHOSPHO2Q8TCD6 241 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 NACC1Q96RE7 527 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 GINS2Q9Y248 185 aa24.25■■□□□ 1.47
CLN3-207ENST00000395653 ARID2Q68CP9 1835 aa24.24■■□□□ 1.47
CLN3-207ENST00000395653 GAS2O43903 313 aaKnown RBP24.24■■□□□ 1.47
CLN3-207ENST00000395653 ATP2A2P16615 1042 aaKnown RBP24.24■■□□□ 1.47
CLN3-207ENST00000395653 CCT6AP40227 531 aaKnown RBP24.24■■□□□ 1.47
CLN3-207ENST00000395653 RARRES1P49788 294 aa24.24■■□□□ 1.47
CLN3-207ENST00000395653 CDC42EP1Q00587 391 aa24.24■■□□□ 1.47
CLN3-207ENST00000395653 DRP2Q13474 957 aa24.24■■□□□ 1.47
CLN3-207ENST00000395653 KIZQ2M2Z5 673 aa24.24■■□□□ 1.47
CLN3-207ENST00000395653 SNX29Q8TEQ0 813 aa24.24■■□□□ 1.47
CLN3-207ENST00000395653 AGO3Q9H9G7 860 aaKnown RBP24.24■■□□□ 1.47
CLN3-207ENST00000395653 GPC3P51654 580 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 NLRP11P59045 1033 aaKnown RBP24.23■■□□□ 1.47
CLN3-207ENST00000395653 BECN1Q14457 450 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 KRT79Q5XKE5 535 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 FAM173BQ6P4H8 233 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 POTEGQ6S5H5 508 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 FAM43BQ6ZT52 329 aaPredicted RBP24.23■■□□□ 1.47
CLN3-207ENST00000395653 PIGOQ8TEQ8 1089 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 CCDC43Q96MW1 224 aaKnown RBP24.23■■□□□ 1.47
CLN3-207ENST00000395653 CDHR5Q9HBB8 845 aa24.23■■□□□ 1.47
CLN3-207ENST00000395653 DBR1Q9UK59 544 aaKnown RBP24.23■■□□□ 1.47
CLN3-207ENST00000395653 VWA3AA6NCI4 1184 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 GRXCR1A8MXD5 290 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 CD52P31358 61 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 EMC2Q15006 297 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 TMEM40Q8WWA1 233 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 PPP1R16BQ96T49 567 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 OSMRQ99650 979 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 ADAMTS10Q9H324 1103 aa24.22■■□□□ 1.47
CLN3-207ENST00000395653 SUCLA2Q9P2R7 463 aaPredicted RBP24.22■■□□□ 1.47
CLN3-207ENST00000395653 PP2D1A8MPX8 630 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 RBAK-RBAKDNI3L0D1 243 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 DGAT1O75907 488 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 PAK2Q13177 524 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 PADI3Q9ULW8 664 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 CLIC4Q9Y696 253 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 SZT2Q5T011 3432 aa24.21■■□□□ 1.47
CLN3-207ENST00000395653 RPS6KA5O75582 802 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 ZSCAN22P10073 491 aaPredicted RBP24.2■■□□□ 1.46
CLN3-207ENST00000395653 PTPAQ15257 358 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 ECM1Q16610 540 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 ODR4Q5SWX8 454 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 TCP11Q8WWU5 503 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 AK8Q96MA6 479 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 MTRQ99707 1265 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 FTHL17Q9BXU8 183 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 PBX4Q9BYU1 374 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 NOC2LQ9Y3T9 749 aaKnown RBP24.2■■□□□ 1.46
CLN3-207ENST00000395653 MICAL3Q7RTP6 2002 aa24.2■■□□□ 1.46
CLN3-207ENST00000395653 EIF4BP23588 611 aaKnown RBP24.19■■□□□ 1.46
CLN3-207ENST00000395653 CDC25AP30304 524 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 DEFB103AP81534 67 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 RAB30Q15771 203 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 ZNF410Q86VK4 478 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 MMTAG2Q9BU76 263 aaKnown RBP24.19■■□□□ 1.46
CLN3-207ENST00000395653 ATP6V0A4Q9HBG4 840 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 XPNPEP1Q9NQW7 623 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 BMP2KQ9NSY1 1161 aaPredicted RBP24.19■■□□□ 1.46
CLN3-207ENST00000395653 KIAA1024Q9UPX6 916 aa24.19■■□□□ 1.46
CLN3-207ENST00000395653 MORC2Q9Y6X9 1032 aaPredicted RBP24.19■■□□□ 1.46
CLN3-207ENST00000395653 A0A087WWV3 80 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.18■■□□□ 1.46
CLN3-207ENST00000395653 F13A1P00488 732 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 AMHP03971 560 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 DNAJB2P25686 324 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.18■■□□□ 1.46
CLN3-207ENST00000395653 RHPN2Q8IUC4 686 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 HERC6Q8IVU3 1022 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 NLRP7Q8WX94 980 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 PSPC1Q8WXF1 523 aaKnown RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms