RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 POLE2P56282 527 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PUDPQ08623 228 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 STX3Q13277 289 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MACC1Q6ZN28 852 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RAB11FIP2Q7L804 512 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RNF135Q8IUD6 432 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TEX2Q8IWB9 1127 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TPH2Q8IWU9 490 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FAM162AQ96A26 154 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FAM81BQ96LP2 452 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TMEM5Q9Y2B1 443 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SRPRBQ9Y5M8 271 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TMEM120BA0PK00 339 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CCNT2O60583 730 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 DTNBO60941 627 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 IGFBP4P22692 258 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 EIF4BP23588 611 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 GNA11P29992 359 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 AARSP49588 968 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC74BQ6ZQY2 392 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NEK10Q6ZWH5 1172 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 IZUMO1Q8IYV9 350 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 URGCPQ8TCY9 931 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 UBASH3BQ8TF42 649 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 AP1S3Q96PC3 154 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NUP58Q9BVL2 599 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MTIF3Q9H2K0 278 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PIGUQ9H490 435 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FAM32AQ9Y421 112 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CFAP73A6NFT4 308 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SPTLC1O15269 473 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 STX11O75558 287 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC166P0CW27 439 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NR1H3Q13133 447 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PLCL1Q15111 1095 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 KRT31Q15323 416 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 GNPTABQ3T906 1256 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ERMARDQ5T6L9 678 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FAM47EQ6ZV65 393 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TAS2R42Q7RTR8 314 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 DYDC2Q96IM9 177 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FAM129AQ9BZQ8 928 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SLC13A1Q9BZW2 595 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CLEC4MQ9H2X3 399 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MANSC1Q9H8J5 431 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ZNF556Q9HAH1 456 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 KRT84Q9NSB2 600 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 INTS7Q9NVH2 962 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NIP7Q9Y221 180 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PTPN22Q9Y2R2 807 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PCDHGB3Q9Y5G1 929 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ZBTB43O43298 467 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MTSS1O43312 755 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TSPAN1O60635 241 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TMCC2O75069 709 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 POLR2EP19388 210 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PRAMEP78395 509 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RHAGQ02094 409 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NFX1Q12986 1120 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CARTPTQ16568 116 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 INSCQ1MX18 579 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC144BQ3MJ40 725 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 HIPK4Q8NE63 616 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RASSF5Q8WWW0 418 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ELMO2Q96JJ3 720 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TRIM54Q9BYV2 358 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CUEDC2Q9H467 287 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TRIM10Q9UDY6 481 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 POLG2Q9UHN1 485 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SERPINB13Q9UIV8 391 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ZNF215Q9UL58 517 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SIK3Q9Y2K2 1263 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 UBA6A0AVT1 1052 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 MOCS3O95396 460 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 PSAPP07602 524 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 ABCB4P21439 1286 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 MSR1P21757 451 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 NTSP30990 170 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CTNNA1P35221 906 aaKnown RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 HSPA13P48723 471 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RGS8P57771 180 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BBS9Q3SYG4 887 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 C8orf74Q6P047 294 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BTNL9Q6UXG8 535 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SYT10Q6XYQ8 523 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 VPS50Q96JG6 964 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 OLFM1Q99784 485 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 ALG1Q9BT22 464 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 NYXQ9GZU5 481 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RPS6KB2Q9UBS0 482 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 F8W810 466 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 GOLGA8HP0CJ92 632 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CYP27A1Q02318 531 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CLEC16AQ2KHT3 1053 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 UVSSAQ2YD98 709 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 C2orf76Q3KRA6 126 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RGL4Q8IZJ4 473 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SPIRE2Q8WWL2 714 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RBM17Q96I25 401 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms